Hg_chrom4_TN10mRNA_8147
Organism: Heterodera glycines Gene Locus: chr4:6533966-6535368 Feature type: polypeptideProtein Sequence
Length: 135
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.689 | 0.689 | 0.269 | 1.022 | 1.852 | 1.519 | 0.617 | 2.222 | 1.481 | 0.801 | 1.571 | 1.743 | 1.029 | 1.425 | 1.814 | 0.635 | 0.486 | 0.786 | 1.14 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7659
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.671
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.952
|
0.006
|
0.166
|
0.023
|
0.021
|
0.030
|
0.010
|
0.022
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008757
|
1.000
|
1.000
|
Hsc_gene_24327.t1
|
Hsc_gene_24327.t1
|
— |
P91375.1 Putative bolA-like protein K11H12.1 [Caenorhabditis elegans]
|
KAH7725747.1 Protein K11H12.1 [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.929|GO:0110165_0.923|GO:0005622_0.909|GO:0005737_0.803|GO:0043226_0.779|GO:0043229_0.775|GO:0016020_0.769|GO:0043227_0.714|GO:0043231_0.704|GO:0008150_0.566|GO:0005829_0.528
|
IPR002634+38-107+|IPR036065+18-112_25-111+|IPR050961+20-128+
|
— |
PF01722+38-107+BolA-like_protein
|
— |
PTHR46229+20-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
99-135
|
1.000
|
1-98
|
5lci_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
15687.240
|
10.396
|
12.000
|
36.296
|
9.630
|
52.593
|
47.407
|
23.704
|
12.593
|
38.519
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
548.186
|
256.544
|
316.696
|
555.024
|
737.554
|
657.609
|
613.491
|
520.767
|
369.976
|
749.200
|
586.675
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.976
|
0.920
|
0.378
|
-0.151
|
— |
-0.444
|
0.381
|
— | — | — | — | — |
No JSON data available for plots.