Hg_chrom4_TN10mRNA_8149
Organism: Heterodera glycines Gene Locus: chr4:6539852-6541352 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 0.369 | 1.058 | 0.365 | 1.146 | 0.95 | 1.071 | 1.323 | 1.293 | 0.858 | 1.363 | 0.622 | 2.058 | 0.814 | 0.756 | 0.907 | 0.781 | 1.283 | 2.035 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7661
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.578
|
0.174
|
0.095
|
0.510
|
0.317
|
0.155
|
0.166
|
0.194
|
0.090
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008759
|
1.000
|
1.000
|
Hsc_gene_17525.t1
|
Hsc_gene_17525.t1
|
— |
P26394.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
|
KAI1730870.1 dTDP-4-dehydrorhamnose 3,5-epimerase domain-containing protein [Ditylenchus destructor]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008830
|
GO:0008150_0.908|GO:0003674_0.753|GO:0009987_0.743|GO:0003824_0.685|GO:0008152_0.678|GO:0009058_0.624|GO:0044238_0.552|GO:0044237_0.550|GO:0016853_0.542|GO:1901135_0.512|GO:0044249_0.510|GO:0043170_0.506
|
IPR000888+1-186_15-185_16-180_16-185+|IPR011051+16-187+|IPR014710+12-189+
|
— |
PF00908+16-185+dTDP-4-dehydrorhamnose_3,5-epimerase
|
— |
PTHR21047+1-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
21158.190
|
7.383
|
2.500
|
28.042
|
14.815
|
44.444
|
55.556
|
15.344
|
12.698
|
48.677
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
1033.276
|
175.801
|
72.809
|
1250.441
|
2383.502
|
2134.495
|
255.680
|
421.269
|
2.764
|
2008.261
|
1148.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.500
|
2.693
|
4.211
|
0.897
|
— |
-3.052
|
-2.459
|
— |
-9.724
|
9.169
|
— | — | — |
No JSON data available for plots.