Hg_chrom4_TN10mRNA_8150
Organism: Heterodera glycines Gene Locus: chr4:6542119-6553648 Feature type: polypeptideProtein Sequence
Length: 2,648
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.133 | 0.639 | 2.474 | 1.309 | 1.259 | 1.092 | 1.057 | 0.772 | 0.852 | 1.139 | 0.955 | 1.018 | 1.198 | 1.326 | 1.111 | 0.687 | 0.629 | 0.407 | 0.233 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7662
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
KKKK,RRRK,RRRR,RKREAEESDQRKREN,RKMTKTLAEGRKSGR,RRGNVEVKPKCKRREG,KRRSRRREGQRGRKSKP,RKRENSKDGKSDQREKEK,KRRKCTPTLALPRKSCRK,KRISPIEVFQAENRREKA,KKGKGAEKKTERRKRDGK,KRENSKDGKSDQREKEKAK,RKCTPTLALPRKSCRKGER,RKLMGPGKGDDENWPKRRS,KKATEKAKRKSAKDKAKEK,KRGLRKEEANGENGEKDRR,RKEEANGENGEKDRRDPKK,KRRVRMHAKPRISGPPLRR
|
32-55
|
0.962
|
52-75
|
0.922
|
1-26
|
0.974
|
1.000
|
0.000
|
0.000
|
0.217
|
0.076
|
0.015
|
0.257
|
0.029
|
0.027
|
0.049
|
0.068
|
0.266
|
0.953
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003874
|
1.000
|
2.000
|
Hsc_gene_17527.t1;Hsc_gene_17527.t2
|
Hsc_gene_17527.t1
|
— | — |
KAI1730873.1 EB module domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008061
|
— |
IPR000742+117-153_267-301_364-400_409-444_697-737_768-814_873-911_932-965_1094-1143_1322-1354_1415-1449_1458-1490_1748-1791_1805-1839_1847-1881_1867-1880_1926-1963_2270-2304_2436-2471+|IPR006149+388-443_1039-1095_1350-1387+|IPR006150+252-290_685-718_724-757_921-954_1048-1085_1093-1130_1351-1384_1446-1479_2031-2066_2149-2184_2256-2291_2599-2646+|IPR036508+38-94+|IPR052740+1356-1722+
|
SM00181+117-153_267-301_364-400_409-444_697-737_768-814_873-911_932-965_1094-1143_1322-1354_1415-1449_1458-1490_1748-1791_1805-1839_1847-1881_1926-1963_2270-2304_2436-2471+|SM00289+252-290_685-718_724-757_921-954_1048-1085_1093-1130_1351-1384_1446-1479_2031-2066_2149-2184_2256-2291_2599-2646+
|
PF01683+388-443_1039-1095_1350-1387+EB_module
|
— |
PTHR45985+1356-1722+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-355;490-627;1504-1686;2074-2160;2299-2433;2512-2648
|
6.000
|
1-302;356-489;628-1503;1687-2073;2161-2298;2434-2511
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
288171.350
|
8.258
|
98.000
|
27.492
|
7.100
|
49.245
|
50.755
|
16.125
|
11.367
|
54.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
violet
|
956.486
|
746.476
|
692.875
|
749.612
|
657.657
|
698.278
|
613.739
|
555.186
|
881.904
|
1755.516
|
1381.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
-0.131
|
0.223
|
-0.220
|
— | — |
-0.442
|
— | — | — | — | — | — |