Hg_chrom4_TN10mRNA_8151
Organism: Heterodera glycines Gene Locus: chr4:6555048-6559206 Feature type: polypeptideProtein Sequence
Length: 652
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 0.856 | 0.669 | 0.899 | 0.716 | 0.826 | 0.767 | 1.074 | 1.772 | 1.347 | 0.744 | 1.895 | 2.599 | 0.885 | 0.814 | 1.052 | 0.754 | 1.022 | 1.534 | 1.398 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7663
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.745
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-18
|
0.993
|
1.000
|
9.000
|
9.000
|
0.073
|
0.078
|
0.007
|
0.191
|
0.420
|
0.573
|
0.466
|
0.020
|
0.777
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008760
|
1.000
|
1.000
|
Hsc_gene_17528.t1
|
Hsc_gene_17528.t1
|
— |
Q99805.1 Transmembrane 9 superfamily member 2 [Homo sapiens]
|
KAI1713494.1 endomembrane protein 70 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.929|GO:0110165_0.929|GO:0016020_0.914|GO:0071944_0.893|GO:0005886_0.889|GO:0005622_0.754|GO:0005737_0.754|GO:0005773_0.754|GO:0043226_0.754|GO:0043227_0.754|GO:0043229_0.754|GO:0043231_0.754|GO:0012505_0.691|GO:0008150_0.631|GO:0009987_0.530
|
IPR004240+14-652_58-608+
|
— |
PF02990+58-608+Endomembrane_protein_70
|
— |
PTHR10766+14-652+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-652
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
75057.790
|
8.133
|
13.000
|
19.018
|
18.252
|
37.883
|
62.117
|
11.043
|
7.975
|
44.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellowgreen
|
3589.136
|
4014.124
|
3274.359
|
3173.308
|
3801.840
|
6447.283
|
3968.625
|
3534.227
|
2192.354
|
3478.043
|
2927.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.524
|
-0.476
|
— |
0.229
|
0.777
|
-0.693
|
-0.970
|
0.306
|
— | — | — | — | — |