Hg_chrom4_TN10mRNA_8156
Organism: Heterodera glycines Gene Locus: chr4:6571004-6577649 Feature type: polypeptideProtein Sequence
Length: 1,458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.069 | 0.723 | 0.946 | 1.212 | 0.914 | 0.563 | 1.303 | 1.036 | 1.372 | 0.779 | 1.049 | 1.562 | 1.148 | 1.232 | 1.715 | 0.686 | 0.946 | 0.317 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7668
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
27-48
|
0.991
|
14-55
|
0.980
|
— | — |
0.000
|
— | — |
0.311
|
0.337
|
0.030
|
0.574
|
0.131
|
0.505
|
0.457
|
0.144
|
0.164
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008764
|
1.000
|
1.000
|
Hsc_gene_17532.t1
|
Hsc_gene_17532.t1
|
— |
Q9VIL0.2 Protein brunelleschi [Drosophila melanogaster]
|
KAI1724557.1 transport protein TRAPPC9, TRAPP II complex subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.969|GO:0005575_0.937|GO:0110165_0.937|GO:0005622_0.867|GO:0032502_0.777|GO:0005737_0.762|GO:0009987_0.716|GO:0032501_0.567|GO:0048856_0.558|GO:0016020_0.525|GO:0007275_0.521|GO:0048731_0.511
|
IPR013935+5-1425_12-335_586-968+
|
— |
PF08626+12-335_586-968+Transport_protein_Trs120_or_TRAPPC9,_TRAPP_II_complex_subunit
|
— |
PTHR21512+5-1425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
96-164;386-512;976-1113
|
4.000
|
1-95;165-385;513-975;1114-1458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
162136.680
|
7.391
|
18.000
|
25.034
|
10.357
|
49.383
|
50.617
|
13.786
|
11.248
|
51.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1731.004
|
3621.831
|
1910.369
|
1767.255
|
1630.569
|
1874.040
|
1877.038
|
1781.351
|
925.026
|
1455.955
|
1228.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.153
|
-1.172
|
— |
-0.148
|
0.216
|
— | — |
0.217
|
— | — | — | — | — |
No JSON data available for plots.