Hg_chrom4_TN10mRNA_8159
Organism: Heterodera glycines Gene Locus: chr4:6582952-6584994 Feature type: polypeptideProtein Sequence
Length: 484
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.673 | 0.639 | 0.499 | 1.584 | 1.007 | 1.82 | 0.723 | 0.964 | 0.67 | 1.503 | 1.215 | 0.402 | 1.47 | 1.729 | 0.62 | 0.779 | 0.501 | 0.954 | 0.608 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7671
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.924
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RPRR,RKKPSNGWQMHGRERRE,KRIPLEEGMAKSKKVPK,GKKGENGENGKPGIPKRAPAGASGKIGEVGRAGRDGTAGKAGTPGEGGTKHLKGRPGPKG
|
— | — | — | — | — | — |
0.004
|
— | — |
0.057
|
0.048
|
0.008
|
0.160
|
0.498
|
0.233
|
0.361
|
0.006
|
0.661
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003875
|
1.000
|
2.000
|
Hsc_gene_17535.t1;Hsc_gene_17535.t2
|
Hsc_gene_17535.t1;Hsc_gene_17535.t2
|
— | — |
KAI1716189.1 g-protein alpha subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+22-72_24-72+|IPR008160+343-400+|IPR050632+26-415+
|
SM01088+22-72+
|
PF01391+343-400+Collagen_triple_helix_repeat_(20_copies)|PF01484+24-72+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+26-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
63-484
|
1.000
|
1-62
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
52481.330
|
10.307
|
29.500
|
32.851
|
6.198
|
48.760
|
51.240
|
19.835
|
13.017
|
50.620
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
36.016
|
66.060
|
64.132
|
41.828
|
15.335
|
106.144
|
29.205
|
75.014
|
8.223
|
2.257
|
4.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.795
|
-0.506
|
-1.475
|
2.802
|
-1.849
|
— |
-1.212
|
— | — | — | — | — |
No JSON data available for plots.