Hg_chrom4_TN10mRNA_8160
Organism: Heterodera glycines Gene Locus: chr4:6585266-6587288 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.5 | 1.047 | 1.112 | 0.346 | 1.182 | 1.015 | 0.691 | 1.485 | 1.121 | 0.524 | 1.22 | 2.048 | 0.931 | 0.658 | 1.547 | 0.718 | 0.908 | 1.418 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRQRIISVVMDAQSFLKRK
|
18-44
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.163
|
0.173
|
0.048
|
0.447
|
0.153
|
0.253
|
0.220
|
0.023
|
0.150
|
0.692
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002102
|
3.000
|
1.000
|
Hsc_gene_17536.t1
|
Hsc_gene_17536.t1
|
— |
P55956.3 Aspartic protease 3 [Caenorhabditis elegans]
|
KHN83855.1 Aspartic protease 3 [Toxocara canis]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.796|GO:0008150_0.791|GO:0110165_0.788|GO:0016020_0.653|GO:0005622_0.600|GO:0003674_0.598|GO:0005737_0.560|GO:0009987_0.544|GO:0043226_0.540|GO:0043227_0.533|GO:0043229_0.532|GO:0071944_0.524|GO:0043231_0.523
|
IPR001461+66-432_107-127_266-279_321-332_406-421+|IPR001969+116-127_321-332+|IPR021109+83-181_88-432_190-433+|IPR033121+100-432_101-430+
|
— |
PF00026+100-432+Eukaryotic_aspartyl_protease
|
G3DSA:2.40.70.10:FF:000002+274-432+Vacuolar_aspartic_proteinase|G3DSA:2.40.70.10:FF:000008+101-240+Cathepsin_D
|
PTHR47966+66-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-434
|
4od9_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
47176.610
|
5.939
|
-2.000
|
15.899
|
12.442
|
42.166
|
57.834
|
8.065
|
7.834
|
57.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
102.546
|
30.309
|
83.773
|
30.023
|
17.200
|
16.993
|
25.162
|
27.375
|
2.056
|
360.533
|
206.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.235
|
— |
-1.370
|
-0.835
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.