Hg_chrom4_TN10mRNA_8162
Organism: Heterodera glycines Gene Locus: chr4:6585268-6587288 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.505 | 1.015 | 1.078 | 0.335 | 1.145 | 0.983 | 0.781 | 1.488 | 1.086 | 0.541 | 1.313 | 2.108 | 1.03 | 0.729 | 1.531 | 0.732 | 0.879 | 1.374 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
36-62
|
0.988
|
24-58
|
0.998
|
— | — |
0.000
|
— | — |
0.144
|
0.111
|
0.050
|
0.413
|
0.123
|
0.252
|
0.213
|
0.047
|
0.085
|
0.650
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002102
|
3.000
|
1.000
|
Hsc_gene_17536.t1
|
Hsc_gene_17536.t1
|
— |
P55956.3 Aspartic protease 3 [Caenorhabditis elegans]
|
KHN83855.1 Aspartic protease 3 [Toxocara canis]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.799|GO:0110165_0.795|GO:0008150_0.792|GO:0016020_0.661|GO:0005622_0.610|GO:0003674_0.597|GO:0043226_0.553|GO:0005737_0.547|GO:0009987_0.545|GO:0043227_0.544|GO:0043229_0.543|GO:0043231_0.534|GO:0071944_0.515
|
IPR001461+37-446_125-145_280-293_335-346_420-435+|IPR001969+134-145_335-346+|IPR021109+78-286_105-446_288-445+|IPR033121+118-446_119-444+
|
— |
PF00026+118-446+Eukaryotic_aspartyl_protease
|
G3DSA:2.40.70.10:FF:000002+288-446+Vacuolar_aspartic_proteinase|G3DSA:2.40.70.10:FF:000008+119-254+Cathepsin_D
|
PTHR47966+37-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-448
|
4od9_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
48886.640
|
6.787
|
1.500
|
16.295
|
12.723
|
42.411
|
57.589
|
8.705
|
7.589
|
56.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
102.546
|
30.309
|
83.773
|
30.023
|
17.200
|
16.993
|
25.162
|
27.375
|
2.056
|
360.533
|
206.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.235
|
— |
-1.370
|
-0.835
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.