Hg_chrom4_TN10mRNA_8163
Organism: Heterodera glycines Gene Locus: chr4:6589099-6593130 Feature type: polypeptideProtein Sequence
Length: 741
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.004 | 0.761 | 0.605 | 1.08 | 1.419 | 0.98 | 1.957 | 1.11 | 1.094 | 0.716 | 1.111 | 0.525 | 0.934 | 1.708 | 1.099 | 0.929 | 0.941 | 0.727 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7673
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.876
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RKSK,RRRR,QKRKK,KRKRGRSFFASIVHRKNK.,KRKKKRKRGRSFFASIVHRKNK
|
45-115
|
0.935
|
— | — | — | — |
0.000
|
— | — |
0.366
|
0.284
|
0.017
|
0.672
|
0.354
|
0.159
|
0.214
|
0.067
|
0.574
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008767
|
1.000
|
1.000
|
Hsc_gene_17538.t1
|
Hsc_gene_17537.t1;Hsc_gene_17537.t2;Hsc_gene_17538.t1
|
— |
Q9U9K0.2 Adducin-related protein 1 [Caenorhabditis elegans]
|
KAI1716178.1 adducin-related protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.913|GO:0005575_0.845|GO:0110165_0.845|GO:0009987_0.803|GO:0071840_0.663|GO:0016043_0.652|GO:0003674_0.642|GO:0016020_0.635|GO:0005622_0.628|GO:0043226_0.611|GO:0006996_0.604|GO:0007010_0.590|GO:0032501_0.572|GO:0043229_0.531
|
IPR001303+139-321_140-321+|IPR036409+127-404_135-339+|IPR051017+23-720+
|
SM01007+139-321+
|
PF00596+140-321+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
G3DSA:3.40.225.10:FF:000013+126-404+Class_II_aldolase
|
PTHR10672+23-720+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;406-741
|
1.000
|
26-405
|
3ocr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
81974.610
|
9.522
|
32.500
|
27.665
|
8.907
|
50.877
|
49.123
|
17.004
|
10.661
|
51.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1827.627
|
1478.634
|
1718.666
|
803.540
|
633.059
|
547.691
|
565.966
|
1334.609
|
3887.204
|
2424.651
|
3051.460
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.017
|
-0.988
|
-0.377
|
-0.194
|
— |
1.179
|
-1.095
|
— | — | — | — | — |
No JSON data available for plots.