Hg_chrom4_TN10mRNA_8164
Organism: Heterodera glycines Gene Locus: chr4:6593349-6595211 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.645 | 1.235 | 0.924 | 0.557 | 1.039 | 0.77 | 0.907 | 1.155 | 1.026 | 1.248 | 0.7 | 1.63 | 1.668 | 1.155 | 0.99 | 1.221 | 0.984 | 1.05 | 1.599 | 0.475 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7674
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — |
30-60
|
0.790
|
— | — | — | — |
0.000
|
— | — |
0.479
|
0.179
|
0.076
|
0.607
|
0.185
|
0.242
|
0.159
|
0.275
|
0.154
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008768
|
1.000
|
1.000
|
Hsc_gene_17539.t1
|
Hsc_gene_17539.t1
|
— |
Q94272.1 Fumarylacetoacetase [Caenorhabditis elegans]
|
KAI1723545.1 fumarylacetoacetate (FAA) hydrolase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004334|GO:0009072
|
GO:0008150_0.703|GO:0005575_0.698|GO:0110165_0.692|GO:0003674_0.642|GO:0009987_0.632|GO:0005622_0.601|GO:0005737_0.584|GO:0008152_0.566|GO:0003824_0.545|GO:0044237_0.530|GO:0044238_0.514
|
IPR005959+4-423_5-422+|IPR011234+156-415+|IPR015377+18-121+|IPR036462+2-118_5-121+|IPR036663+119-424_124-421+
|
— |
PF01557+156-415+Fumarylacetoacetate_(FAA)_hydrolase_family|PF09298+18-121+Fumarylacetoacetase_N-terminal
|
G3DSA:2.30.30.230:FF:000001+3-118+Fumarylacetoacetase|G3DSA:3.90.850.10:FF:000004+119-424+Fumarylacetoacetase
|
PTHR43069+4-423+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
48209.830
|
6.010
|
-3.000
|
23.095
|
12.009
|
45.958
|
54.042
|
11.778
|
11.316
|
52.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
2071.261
|
957.130
|
1843.076
|
2217.579
|
2562.926
|
2243.672
|
3059.616
|
3255.735
|
887.445
|
2343.783
|
1719.638
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
1.075
|
0.375
|
0.177
|
-0.177
|
0.457
|
0.430
|
— |
-1.516
|
— | — | — | — |
No JSON data available for plots.