Hg_chrom4_TN10mRNA_8169
Organism: Heterodera glycines Gene Locus: chr4:6611101-6617126 Feature type: polypeptideProtein Sequence
Length: 1,032
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 0.992 | 0.881 | 0.869 | 0.921 | 1.863 | 0.496 | 2.229 | 0.969 | 1.611 | 0.529 | 1.71 | 1.13 | 1.379 | 1.147 | 1.37 | 0.604 | 0.778 | 0.82 | 0.313 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7678
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
chloroplast
|
RTMKRHR
|
— | — |
51-72
|
0.987
|
1-17
|
0.858
|
1.000
|
0.000
|
0.000
|
0.561
|
0.177
|
0.006
|
0.678
|
0.163
|
0.249
|
0.114
|
0.040
|
0.253
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003876
|
2.000
|
1.000
|
Hsc_gene_17543.t1
|
Hsc_gene_17543.t1
|
— | — |
KAI1716201.1 beta-catenin/armadillo-related protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007155|GO:0045296
|
GO:0005575_0.931|GO:0110165_0.931|GO:0008150_0.898|GO:0005622_0.864|GO:0009987_0.862|GO:0016020_0.860|GO:0043226_0.801|GO:0043229_0.791|GO:0003674_0.762|GO:0071944_0.761|GO:0005488_0.734|GO:0005886_0.722|GO:0005515_0.707|GO:0050789_0.669|GO:0065007_0.669|GO:0032502_0.660|GO:0048856_0.660|GO:0050794_0.657|GO:0005737_0.625|GO:0030054_0.611|GO:0032501_0.590|GO:0050896_0.587|GO:0043227_0.572|GO:0051716_0.561|GO:0043231_0.555|GO:0007275_0.548|GO:0016043_0.547|GO:0071840_0.547|GO:0070161_0.525|GO:0005911_0.524|GO:0007155_0.518|GO:0007154_0.510|GO:0023052_0.504
|
IPR000225+310-348_353-396_571-610_612-672_799-841+|IPR011989+310-871+|IPR013284+320-724+|IPR016024+312-685+
|
SM00185+310-348_353-396_571-610_612-672_799-841+
|
— | — |
PTHR45976+320-724+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-286;932-997
|
2.000
|
287-931;998-1032
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
115800.120
|
6.875
|
10.000
|
23.934
|
10.659
|
48.740
|
51.260
|
13.566
|
10.368
|
48.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
2060.848
|
2786.378
|
3161.297
|
2116.939
|
2122.592
|
2319.859
|
4041.962
|
4491.828
|
418.824
|
811.774
|
643.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.534
|
-0.470
|
— |
0.143
|
0.812
|
0.852
|
— | — | — | — | — | — |