SCN Proteipedia

Hg_chrom4_TN10mRNA_8174

Organism: Heterodera glycines Gene Locus: chr4:6623621-6633209 Feature type: polypeptide

Protein Sequence

Length: 1,448

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.899	0.915	0.779	0.333	1.186	2.09	1.011	1.209	0.675	1.055	0.743	1.341	0.844	1.195	1.846	1.421	0.747	0.576	0.85	0.345	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7683	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RGEKRRT,RRRHGMAHRREKREHRHHRPEHRDRGGQRR	—	—	—	—	—	—	0.000	—	—	0.225	0.085	0.026	0.634	0.154	0.154	0.134	0.014	0.604	0.121

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008775	1.000	1.000	Hsc_gene_17547.t1	Hsc_gene_17547.t1	—	Q22366.2 Rab-3-interacting molecule unc-10 [Caenorhabditis elegans]	KAI1724565.1 c2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006886\|GO:0006887\|GO:0016020\|GO:0031267	GO:0005575_0.926\|GO:0110165_0.920\|GO:0008150_0.858\|GO:0009987_0.820\|GO:0065007_0.768\|GO:0050789_0.701\|GO:0005622_0.686\|GO:0050794_0.651\|GO:0071840_0.640\|GO:0016043_0.637\|GO:0003674_0.624\|GO:0005488_0.610\|GO:0016020_0.606\|GO:0051179_0.577\|GO:0043226_0.569\|GO:0051234_0.558\|GO:0006810_0.553\|GO:0030054_0.542\|GO:0045202_0.504	IPR000008+755-878_771-876_772-868_1297-1418_1311-1416_1313-1420+\|IPR001478+590-669_591-664_592-663_592-667+\|IPR010911+16-142+\|IPR011011+20-142+\|IPR013083+7-152+\|IPR017455+75-130+\|IPR035892+751-882_752-879_1281-1428_1311-1425+\|IPR036034+539-670_588-668+\|IPR039032+11-1446+\|IPR054386+81-128+	SM00228+590-669+\|SM00239+771-876_1311-1416+	PF00168+772-868_1313-1420+C2_domain\|PF00595+592-663+PDZ_domain\|PF22601+81-128+RIM2-alpha_zinc_finger	G3DSA:3.30.40.10:FF:000780+12-150+Rab-3-interacting_molecule_unc-10	PTHR12157+11-1446+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-42;138-488;891-1288;1430-1448	3.000	43-137;489-890;1289-1429	8z22_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.944	160588.310	10.143	54.500	27.762	7.735	54.351	45.649	16.367	11.395	49.931

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1327.736	3940.387	3729.417	1760.381	700.274	693.647	1470.874	1700.196	370.502	282.776	320.373

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.309	-1.300	-0.974	-1.362	—	1.096	1.191	—	—	—	—	—	4.787

No JSON data available for plots.

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