SCN Proteipedia

Hg_chrom4_TN10mRNA_8178

Organism: Heterodera glycines Gene Locus: chr4:6652805-6657554 Feature type: polypeptide

Protein Sequence

Length: 1,261

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.784	0.959	1.081	0.602	1.176	1.2	0.604	1.903	1.322	1.35	0.937	1.26	1.388	0.824	1.084	1.122	0.832	0.805	0.61	0.863	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7687	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKKRR,ARKKR	—	—	—	—	—	—	0.000	—	—	0.479	0.109	0.004	0.578	0.156	0.126	0.230	0.027	0.048	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008777	1.000	1.000	Hsc_gene_17551.t1	Hsc_gene_17551.t1	—	A8PJX4.2 Clustered mitochondria protein homolog [Brugia malayi]	KAF7632255.1 Clu domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006996	GO:0008150_0.907\|GO:0005575_0.812\|GO:0110165_0.809\|GO:0003674_0.775\|GO:0005622_0.729\|GO:0051179_0.709\|GO:0009987_0.693\|GO:0005488_0.681\|GO:0005737_0.644\|GO:0051640_0.628\|GO:0097159_0.594\|GO:0003676_0.574\|GO:0003723_0.557\|GO:0003729_0.544	IPR007967+277-346+\|IPR011990+956-1113_1006-1193_1114-1223+\|IPR023231+250-358_257-353+\|IPR025697+381-627_402-626+\|IPR027523+33-1219+\|IPR028275+99-171+\|IPR033646+755-953_757-953+	—	PF05303+277-346+GSKIP_domain\|PF12807+755-953+Translation_initiation_factor_eIF3_subunit_135\|PF13236+402-626+Clustered_mitochondria\|PF13374+1028-1066+Tetratricopeptide_repeat\|PF13424+1114-1182+Tetratricopeptide_repeat\|PF15044+99-171+Mitochondrial_function,_CLU-N-term	G3DSA:3.30.2280.10:FF:000002+256-353+Clustered_mitochondria_protein_homolog	PTHR12601+33-1219+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-68;667-716	2.000	69-666;717-1261	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.560	143077.700	6.679	5.000	28.311	12.530	50.040	49.960	15.305	13.006	46.154

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	yellow	4238.498	4155.592	3135.570	6550.052	8062.675	5558.413	4199.314	3704.794	2102.620	3704.057	3017.727

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.635	0.519	1.171	0.268	-0.521	-0.395	-0.688	—	—	1.812	—	—	—

No JSON data available for plots.

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