SCN Proteipedia

Hg_chrom4_TN10mRNA_8179

Organism: Heterodera glycines Gene Locus: chr4:6660415-6665739 Feature type: polypeptide

Protein Sequence

Length: 1,119

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.966	0.852	0.845	0.37	1.221	0.939	1.064	1.072	1.47	1.147	1.192	1.367	1.117	0.842	0.857	0.843	0.908	1.056	0.619	0.92	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7688	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	LGEV,RRGGPNYQGGLRKFKE	—	—	—	—	—	—	0.000	—	—	0.150	0.221	0.022	0.572	0.155	0.355	0.118	0.141	0.181	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008778	1.000	1.000	Hsc_gene_17552.t1	Hsc_gene_17552.t1	—	P53585.1 Probable ATP-citrate synthase [Caenorhabditis elegans]	KAI1716194.1 ATP citrate lyase citrate-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0003878\|GO:0006085\|GO:0006101\|GO:0046912	GO:0005575_0.810\|GO:0110165_0.810\|GO:0008150_0.749\|GO:0005622_0.740\|GO:0005737_0.695\|GO:0009987_0.693\|GO:0003674_0.634\|GO:0016020_0.622\|GO:0008152_0.597\|GO:0044237_0.578\|GO:0043226_0.574\|GO:0043229_0.560\|GO:0043227_0.524\|GO:0044281_0.505	IPR002020+1-1108_895-1098+\|IPR003781+505-610+\|IPR005811+670-794+\|IPR013650+54-211+\|IPR014608+1-1114+\|IPR016102+252-440_271-406_635-820+\|IPR016143+947-1048+\|IPR017440+756-772+\|IPR017866+282-307+\|IPR032263+253-430+\|IPR033847+671-700+\|IPR036291+502-633+\|IPR036969+676-1110+	—	PF00285+895-1098+Citrate_synthase,_C-terminal_domain\|PF00549+670-794+CoA-ligase\|PF02629+505-610+CoA_binding_domain\|PF08442+54-211+ATP-grasp_domain\|PF16114+253-430+ATP_citrate_lyase_citrate-binding	G3DSA:3.40.50.261:FF:000003+635-820+ATP-citrate_synthase_subunit\|G3DSA:3.40.50.261:FF:000004+252-439+ATP-citrate_synthase_subunit\|G3DSA:3.40.50.720:FF:000024+498-634+Probable_ATP-citrate_synthase	PTHR23118+1-1108+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	444-503	2.000	1-443;504-1119	6hxi_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.722	123038.120	7.699	13.000	26.184	10.098	44.951	55.049	14.209	11.975	49.419

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	white	11250.558	2601.111	3980.101	12901.711	50960.840	25242.331	13815.621	3640.097	3464.627	4194.542	3881.721

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.385	2.173	1.805	1.950	-1.000	-0.858	-2.902	2.068	—	2.045	3.931	—	—

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