SCN Proteipedia

Hg_chrom4_TN10mRNA_8180

Organism: Heterodera glycines Gene Locus: chr4:6667429-6672612 Feature type: polypeptide

Protein Sequence

Length: 1,008

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.854	0.946	0.956	1.266	1.207	1.272	0.886	1.339	1.146	1.193	0.812	1.401	0.854	0.897	1.255	0.992	0.732	1.007	0.992	0.7	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7689	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KAKMLKKAKKSRK	—	—	36-69	0.799	—	—	0.000	—	—	0.415	0.231	0.070	0.676	0.284	0.374	0.284	0.086	0.450	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008779	1.000	1.000	Hsc_gene_17553.t1	Hsc_gene_17553.t1	—	D3ZEY4.1 Diacylglycerol kinase theta [Rattus norvegicus]	KAF7634477.1 Diacylglycerol kinase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004143\|GO:0007165\|GO:0007205\|GO:0016301	GO:0005575_0.844\|GO:0008150_0.839\|GO:0110165_0.838\|GO:0003674_0.775\|GO:0009987_0.763\|GO:0003824_0.638\|GO:0065007_0.605\|GO:0016020_0.585\|GO:0005622_0.580\|GO:0016740_0.579\|GO:0016772_0.543\|GO:0016301_0.537\|GO:0016773_0.536\|GO:0001727_0.528\|GO:0004143_0.528\|GO:0050896_0.511	IPR000159+311-402_315-402_404-502_406-502+\|IPR000756+767-922+\|IPR001206+597-735_601-718_601-729+\|IPR002219+57-107_58-107_58-108_120-169_121-169_186-238_187-238_188-238_188-239+\|IPR016064+601-939+\|IPR017438+594-731+\|IPR020454+55-69_71-80_84-95_96-108+\|IPR029071+312-401_407-501+\|IPR037607+119-951+\|IPR046349+49-108_117-170_181-243+	SM00045+767-922+\|SM00046+601-729+\|SM00109+58-107_121-169_186-238+\|SM00314+311-402_404-502+	PF00130+58-108_188-239+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)\|PF00609+767-922+Diacylglycerol_kinase_accessory_domain\|PF00781+601-718+Diacylglycerol_kinase_catalytic_domain\|PF00788+315-402_406-502+Ras_association_(RalGDS/AF-6)_domain	G3DSA:2.60.200.40:FF:000004+766-932+Diacylglycerol_kinase\|G3DSA:3.40.50.10330:FF:000011+598-742+Diacylglycerol_kinase	PTHR11255+119-951+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;268-318;949-1008	2.000	4-267;319-948	2e73_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.662	112145.770	6.699	3.500	26.687	9.425	47.123	52.877	14.187	12.500	50.496

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	2309.047	3811.148	5757.026	2924.258	1536.178	2684.284	1498.737	3177.809	615.887	1619.124	1189.165

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.367	-0.519	-0.869	-0.960	0.819	-0.830	—	-0.943	—	—	—	—	—

No JSON data available for plots.

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