SCN Proteipedia

Hg_chrom4_TN10mRNA_8182

Organism: Heterodera glycines Gene Locus: chr4:6676096-6679267 Feature type: polypeptide

Protein Sequence

Length: 762

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.038	0.824	1.121	0.588	0.766	1.817	0.672	1.509	0.642	1.1	0.537	1.467	1.312	1.514	1.768	1.725	0.624	0.577	0.404	0.232	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7691	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.674

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRKSR	—	—	—	—	—	—	0.000	—	—	0.280	0.199	0.015	0.772	0.091	0.142	0.103	0.054	0.527	0.098

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008781	1.000	1.000	Hsc_gene_17556.t1	Hsc_gene_17556.t1	—	A8XU52.2 Axin-like protein pry-1 [Caenorhabditis briggsae]	KAF7634456.1 RGS domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0090090	GO:0008150_0.961\|GO:0032501_0.837\|GO:0050896_0.828\|GO:0065007_0.816\|GO:0009987_0.806\|GO:0050789_0.804\|GO:0050794_0.799\|GO:0032502_0.716\|GO:0048856_0.716\|GO:0005575_0.706\|GO:0110165_0.705\|GO:0016043_0.696\|GO:0071840_0.696\|GO:0007275_0.692\|GO:0051716_0.690\|GO:0048519_0.675\|GO:0048731_0.673\|GO:0023052_0.671\|GO:0007154_0.669\|GO:0048523_0.666\|GO:0048869_0.661\|GO:0030154_0.660\|GO:0005622_0.655\|GO:0048468_0.648\|GO:0007165_0.645\|GO:0016020_0.643\|GO:0007399_0.637\|GO:0022008_0.633\|GO:0010646_0.631\|GO:0023051_0.629\|GO:0048583_0.624\|GO:0009966_0.615\|GO:0048699_0.615\|GO:0009653_0.614\|GO:0043226_0.608\|GO:0030182_0.607\|GO:0007166_0.606\|GO:0043229_0.596\|GO:0048666_0.595\|GO:0030030_0.590\|GO:0120036_0.587\|GO:0009968_0.578\|GO:0010648_0.578\|GO:0023057_0.578\|GO:0031175_0.578\|GO:0048585_0.578\|GO:0000902_0.574\|GO:0048667_0.567\|GO:0048812_0.566\|GO:0048858_0.566\|GO:0120039_0.566\|GO:0016055_0.563\|GO:0030111_0.563\|GO:0007409_0.562\|GO:0061564_0.562\|GO:0007411_0.557\|GO:0097485_0.557\|GO:0030178_0.554\|GO:0043227_0.548\|GO:0043231_0.532\|GO:0071944_0.508\|GO:0005737_0.504	IPR001158+674-758_691-752+\|IPR016137+16-121_17-136+\|IPR029071+690-755+\|IPR036305+9-142+\|IPR038207+681-756+\|IPR043581+8-755+\|IPR044926+3-140+	—	PF00615+17-136+Regulator_of_G_protein_signaling_domain\|PF00778+691-752+DIX_domain	—	PTHR46102+8-755+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	221-689;762-762	2.000	1-220;690-761	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.923	84162.200	8.915	22.500	25.984	9.055	52.493	47.507	15.223	10.761	53.543

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1201.373	1805.195	1191.668	836.473	703.780	799.483	980.571	1199.699	455.586	2095.490	1392.674

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.828	-1.247	-0.403	-0.281	0.199	0.304	—	—	—	—	—	—	—

No JSON data available for plots.

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