SCN Proteipedia

Hg_chrom4_TN10mRNA_8184

Organism: Heterodera glycines Gene Locus: chr4:6684890-6688050 Feature type: polypeptide

Protein Sequence

Length: 549

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.89	0.847	0.927	0.251	1.275	1.868	1.041	1.275	0.648	1.009	0.938	1.071	1.063	0.525	1.933	1.041	0.985	0.856	1.121	0.536	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7693	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.899

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRNGQTERQISKFGRK,RKGGGEGVRADVTRRERGK	37-57	0.960	—	—	—	—	0.000	—	—	0.240	0.194	0.015	0.715	0.062	0.236	0.194	0.027	0.320	0.104

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008783	1.000	1.000	Hsc_gene_17558.t1	Hsc_gene_17558.t1;Hsc_gene_17558.t2	—	Q9Z0R6.2 Intersectin-2 [Mus musculus]	KAI1724604.1 nucleoside transporter domain-containing protein [Ditylenchus destructor]	No	-0.440

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.944\|GO:0005575_0.938\|GO:0110165_0.929\|GO:0009987_0.903\|GO:0005622_0.867\|GO:0065007_0.854\|GO:0016020_0.852\|GO:0050789_0.836\|GO:0050794_0.827\|GO:0043226_0.826\|GO:0043229_0.812\|GO:0032501_0.787\|GO:0032502_0.779\|GO:0048856_0.779\|GO:0071840_0.766\|GO:0005737_0.760\|GO:0016043_0.760\|GO:0043227_0.757\|GO:0007275_0.756\|GO:0048518_0.747\|GO:0048731_0.744\|GO:0048522_0.738\|GO:0030154_0.735\|GO:0048869_0.735\|GO:0048468_0.730\|GO:0007399_0.718\|GO:0022008_0.709\|GO:0009653_0.700\|GO:0048699_0.699\|GO:0030182_0.697\|GO:0030030_0.696\|GO:0051128_0.696\|GO:0120036_0.696\|GO:0050793_0.695\|GO:0040007_0.693\|GO:0048666_0.692\|GO:0048589_0.685\|GO:0031175_0.684\|GO:0000902_0.681\|GO:0051094_0.681\|GO:0022603_0.678\|GO:0040008_0.678\|GO:0048858_0.677\|GO:0120039_0.677\|GO:0016049_0.676\|GO:0048812_0.676\|GO:0048638_0.675\|GO:0060560_0.675\|GO:0001558_0.674\|GO:0022604_0.674\|GO:0030307_0.670\|GO:0045927_0.670\|GO:0048588_0.670\|GO:0048639_0.670\|GO:0097484_0.670\|GO:1903859_0.670\|GO:1903861_0.670\|GO:1990138_0.670\|GO:0043228_0.667\|GO:0043232_0.667\|GO:0005829_0.609\|GO:0005856_0.582\|GO:0031982_0.579\|GO:0005576_0.575\|GO:0005615_0.566\|GO:0043230_0.565\|GO:0065010_0.564\|GO:1903561_0.563\|GO:0070062_0.561\|GO:0015630_0.558\|GO:0005815_0.550\|GO:0005813_0.547\|GO:0005814_0.547	IPR001452+490-549_493-549_500-543+\|IPR027267+26-198+\|IPR036028+491-548+	SM00326+493-549+	PF00018+500-543+SH3_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	202-444	2.000	1-201;445-549	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.852	61930.300	10.114	23.000	30.965	9.654	55.191	44.809	18.215	12.750	47.541

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	3206.223	7383.777	4008.978	2950.148	3512.184	3284.946	5228.114	2477.498	1865.868	1810.706	1834.347

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.110	-1.461	-0.334	0.220	—	0.682	—	1.217	—	—	—	—	—

No JSON data available for plots.

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