Hg_chrom4_TN10mRNA_8186
Organism: Heterodera glycines Gene Locus: chr4:6690242-6692355 Feature type: polypeptideProtein Sequence
Length: 584
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 1.155 | 0.654 | 0.236 | 3.196 | 0.966 | 0.632 | 0.599 | 0.875 | 0.972 | 1.427 | 1.813 | 0.571 | 0.527 | 1.817 | 0.465 | 1.179 | 0.571 | 0.922 | 0.353 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7695
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KREEEEEGLPKMVKK,KKETIKKGNDIIKRKEE,IKRKEENEEEGGKREENKEEKKDEEEEEEKKEREKREEEEEEKRKREKREEEEEEKRKREKREEEEEEKREREKREEEEEEKREREKREEEEEEKREREKR
|
— | — | — | — |
1-16
|
0.986
|
1.000
|
1.000
|
1.000
|
0.189
|
0.048
|
0.041
|
0.199
|
0.229
|
0.394
|
0.261
|
0.046
|
0.680
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008785
|
1.000
|
1.000
|
Hsc_gene_17560.t1
|
— | — | — |
KAI1716184.1 modulator of levamisole receptor-1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005892
|
— |
IPR033438+22-137+
|
— |
PF17175+22-137+Modulator_of_levamisole_receptor-1
|
— |
PTHR33748+2-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-584
|
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
67956.920
|
4.848
|
-22.500
|
42.295
|
5.651
|
61.473
|
38.527
|
19.521
|
22.774
|
38.870
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
262.077
|
56.823
|
18.647
|
18.440
|
35.397
|
74.364
|
58.300
|
21.245
|
51.993
|
1001.387
|
594.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.843
|
-1.761
|
— |
0.908
|
1.085
|
— |
-1.919
|
1.601
|
-4.418
|
— |
-4.517
|
— | — |