SCN Proteipedia

Hg_chrom4_TN10mRNA_8188

Organism: Heterodera glycines Gene Locus: chr4:6697733-6700160 Feature type: polypeptide

Protein Sequence

Length: 483

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.77	0.963	0.979	0.571	1.346	1.646	0.592	1.242	1.288	1.119	1.098	1.461	1.265	0.756	1.352	0.828	0.916	0.722	1.115	1.096	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7697	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.649

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	RRKIHAAKENDFLRQRRTK,RKIHAAKENDFLRQRRTKL	—	—	—	—	—	—	0.000	—	—	0.686	0.298	0.015	0.622	0.079	0.083	0.126	0.024	0.214	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008787	1.000	1.000	Hsc_gene_17562.t1	Hsc_gene_17562.t1	—	A8XJL7.2 Serine/threonine-protein kinase sax-1 [Caenorhabditis briggsae]	KAI1716182.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.951\|GO:0009987_0.925\|GO:0005575_0.913\|GO:0110165_0.908\|GO:0005622_0.860\|GO:0065007_0.835\|GO:0050789_0.828\|GO:0050794_0.813\|GO:0016043_0.719\|GO:0071840_0.719\|GO:0003674_0.698\|GO:0003824_0.698\|GO:0016740_0.698\|GO:0140096_0.693\|GO:0016772_0.689\|GO:0004672_0.685\|GO:0016301_0.685\|GO:0016773_0.685\|GO:0005737_0.667\|GO:0004674_0.616\|GO:0050896_0.604\|GO:0043226_0.577\|GO:0051716_0.570\|GO:0043229_0.555\|GO:0007154_0.525\|GO:0071944_0.523\|GO:0016020_0.520\|GO:0007165_0.517\|GO:0023052_0.517	IPR000719+81-375_82-374+\|IPR000961+376-449+\|IPR008271+200-212+\|IPR011009+68-391+\|IPR017441+87-110+\|IPR050236+19-440+	SM00220+81-375+	PF00069+82-374+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000057+270-395+Non-specific_serine/threonine_protein_kinase\|G3DSA:1.10.510.10:FF:000086+165-233+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.200.20:FF:000192+54-164+Serine/threonine-protein_kinase_cot-1	PTHR24356+19-440+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6;455-483	1.000	7-454	6bxi_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.605	55939.610	7.898	8.000	29.814	12.215	51.760	48.240	16.356	13.458	42.857

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	midnightblue	3887.935	5699.655	3792.794	3680.546	3507.970	3529.215	3028.708	5456.731	3289.709	3781.575	3570.775

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.817	-0.768	—	-0.101	—	-0.210	0.522	-0.706	—	—	—	—	—

No JSON data available for plots.

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