Hg_chrom4_TN10mRNA_8189
Organism: Heterodera glycines Gene Locus: chr4:6712210-6714879 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 1.24 | 1.279 | 0.735 | 1.35 | 0.875 | 0.685 | 1.066 | 1.232 | 1.556 | 1.228 | 1.003 | 0.948 | 0.533 | 0.74 | 1.097 | 0.629 | 0.937 | 0.328 | 0.753 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7698
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.294
|
0.243
|
0.013
|
0.875
|
0.216
|
0.127
|
0.297
|
0.013
|
0.261
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008788
|
1.000
|
1.000
|
Hsc_gene_17563.t1
|
Hsc_gene_17563.t1
|
— | — |
KAI1724586.1 MA3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045892
|
GO:0008150_0.909|GO:0005575_0.835|GO:0110165_0.823|GO:0050896_0.761|GO:0005622_0.749|GO:0009987_0.602|GO:0003674_0.584|GO:0016020_0.575|GO:0065007_0.539|GO:0005737_0.536|GO:0043226_0.532|GO:0043229_0.515|GO:0050789_0.513
|
IPR003891+131-254_132-245_134-243_295-418_296-409_299-392+|IPR016024+134-253_296-417+|IPR039778+39-413+
|
SM00544+132-245_296-409+
|
PF02847+134-243_299-392+MA3_domain
|
— |
PTHR12626+39-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;428-469
|
1.000
|
36-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
51887.970
|
5.028
|
-11.000
|
28.998
|
8.529
|
49.254
|
50.746
|
13.859
|
15.139
|
49.467
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey60
|
2217.524
|
1582.027
|
2568.007
|
2226.970
|
2510.117
|
2151.883
|
2589.194
|
2892.240
|
1767.305
|
2181.026
|
2003.717
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.470
|
0.356
|
-0.097
|
0.141
|
-0.207
|
0.277
|
— | — | — | — | — | — | — |
No JSON data available for plots.