SCN Proteipedia

Hg_chrom4_TN10mRNA_8191

Organism: Heterodera glycines Gene Locus: chr4:6716051-6721993 Feature type: polypeptide

Protein Sequence

Length: 1,068 (Signal peptide: 1-15)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.631	1.328	1.038	1.001	0.921	0.576	0.836	1.264	1.061	1.48	0.596	1.102	1.639	0.846	1.166	1.378	0.737	1.135	1.008	0.716	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7699	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane\|lysosome_vacuole	—	—	—	—	—	—	1-15	0.773	0.794	1.000	1.000	0.155	0.052	0.005	0.295	0.244	0.588	0.439	0.103	0.818	0.108

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002103	2.000	2.000	Hsc_gene_17564.t1;Hsc_gene_17564.t2	Hsc_gene_17564.t1;Hsc_gene_17564.t2	—	H2KZU7.1 Tyrosine-protein kinase receptor svh-2 [Caenorhabditis elegans]	KAH7716210.1 TK/Met protein kinase [Aphelenchus avenae]	No	-0.370

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.951\|GO:0005575_0.847\|GO:0009987_0.845\|GO:0110165_0.845\|GO:0050896_0.735\|GO:0065007_0.728\|GO:0050789_0.710\|GO:0003674_0.680\|GO:0005622_0.661\|GO:0050794_0.656\|GO:0051716_0.653\|GO:0032501_0.602\|GO:0007154_0.596\|GO:0023052_0.593\|GO:0003824_0.589\|GO:0007165_0.577\|GO:0016740_0.550\|GO:0032502_0.547\|GO:0048856_0.547\|GO:0048518_0.543\|GO:0140096_0.539\|GO:0005488_0.532\|GO:0008152_0.517\|GO:0071840_0.515\|GO:0071944_0.514\|GO:0005515_0.513\|GO:0016043_0.512\|GO:0005886_0.504\|GO:0016020_0.504	IPR000719+723-1003+\|IPR001245+727-998_811-824_925-947_971-993+\|IPR002909+553-596+\|IPR008266+854-866+\|IPR011009+723-996+\|IPR015943+92-486+\|IPR017441+729-757+\|IPR020635+723-1000+\|IPR036352+97-357+\|IPR050122+315-999+	SM00219+723-1000+	PF01833+553-596+IPT/TIG_domain\|PF07714+727-998+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR24416+315-999+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1068	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.743	118977.540	6.295	-3.500	23.408	12.172	45.506	54.494	12.172	11.236	52.809

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	steelblue	1769.459	3122.345	2347.230	1942.549	1992.328	2393.009	1825.998	1936.587	915.371	1219.837	1089.351

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.641	-0.822	-0.165	—	0.280	-0.382	-0.410	—	—	—	—	—	—

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