Hg_chrom4_TN10mRNA_8192
Organism: Heterodera glycines Gene Locus: chr4:6722703-6727755 Feature type: polypeptideProtein Sequence
Length: 834
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.143 | 0.676 | 0.662 | 1.259 | 1.261 | 0.585 | 0.959 | 1.146 | 1.15 | 0.945 | 1.129 | 1.099 | 1.13 | 1.297 | 1.85 | 0.747 | 0.69 | 0.646 | 1.023 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7700
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.570
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KDKMIRRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.089
|
0.008
|
0.697
|
0.158
|
0.380
|
0.262
|
0.043
|
0.386
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002104
|
1.000
|
3.000
|
Hsc_gene_17565.t2;Hsc_gene_17565.t3;Hsc_gene_17565.t4
|
Hsc_gene_17565.t1;Hsc_gene_17565.t2;Hsc_gene_17565.t3;Hsc_gene_17565.t4
|
— | — |
KAI1724584.1 protein Dok-7 [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019901|GO:0061098
|
— |
IPR011993+14-123+|IPR037746+19-752+
|
— | — | — |
PTHR21636+19-752+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-354;404-593;651-696
|
4.000
|
1-267;355-403;594-650;697-834
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
93853.910
|
8.605
|
19.000
|
25.779
|
10.192
|
53.118
|
46.882
|
14.508
|
11.271
|
49.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
2086.970
|
3295.482
|
1861.489
|
1684.313
|
1691.792
|
1662.277
|
2616.816
|
2105.680
|
2033.232
|
2011.374
|
2020.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.054
|
-1.105
|
— | — | — |
0.664
|
0.235
|
0.456
|
— | — | — | — | — |
No JSON data available for plots.