SCN Proteipedia

Hg_chrom4_TN10mRNA_8194

Organism: Heterodera glycines Gene Locus: chr4:6740984-6742545 Feature type: polypeptide

Protein Sequence

Length: 360

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.84	1.292	0.707	0.67	0.833	2.066	0.628	1.667	1.296	1.164	0.295	0.98	1.08	0.962	2.211	0.595	1.184	0.926	1.282	0.817	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7702	—	—	1.889	1.000	3.000	1.000	2.000	1.000	4.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RQKRGKTEAPRRPT	—	—	—	—	—	—	0.000	—	—	0.237	0.328	0.009	0.731	0.068	0.251	0.171	0.025	0.336	0.278

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002105	2.000	2.000	Hsc_gene_13.t1;Hsc_gene_5926.t1	Hsc_gene_13.t1;Hsc_gene_17654.t1;Hsc_gene_20430.t1;Hsc_gene_2309.t1;Hsc_gene_23103.t1;Hsc_gene_24159.t1;Hsc_gene_24189.t1;Hsc_gene_25629.t1;Hsc_gene_25908.t1;Hsc_gene_5926.t1;Hsc_gene_7733.t1;Hsc_gene_8197.t1;Hsc_gene_8199.t1;Hsc_gene_8201.t1	—	Q06180.2 Tyrosine-protein phosphatase non-receptor type 2 [Mus musculus]	KAI6231589.1 Receptor-type tyrosine-protein phosphatase epsilon [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311	GO:0008150_0.817\|GO:0005575_0.796\|GO:0110165_0.791\|GO:0003674_0.789\|GO:0009987_0.767\|GO:0016020_0.682\|GO:0003824_0.672\|GO:0016787_0.592\|GO:0140096_0.580\|GO:0008152_0.578\|GO:0071944_0.570\|GO:0016788_0.565\|GO:0065007_0.554\|GO:0042578_0.552\|GO:0016791_0.551\|GO:0005886_0.547\|GO:0044237_0.544\|GO:0050789_0.540\|GO:0043170_0.539\|GO:0005622_0.526\|GO:0044238_0.526\|GO:0043226_0.523\|GO:0004721_0.521\|GO:0050794_0.501	IPR000242+82-333_83-331_105-329_128-135_143-163_233-250_267-285_298-313_314-324+\|IPR000387+264-322+\|IPR003595+234-330+\|IPR016130+270-280+\|IPR029021+25-339_80-339+\|IPR052782+14-340+	SM00194+82-333+\|SM00404+234-330+	PF00102+105-329+Protein-tyrosine_phosphatase	—	PTHR46163+14-340+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-56	1.000	57-360	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.752	41584.310	10.084	20.000	25.000	11.667	50.000	50.000	16.111	8.889	46.389

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	6151.984	84.353	119.236	474.726	1073.643	25237.890	539.153	32803.742	89.179	4223.266	2451.514

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	2.355	2.106	1.146	4.569	-5.538	—	-5.780	-5.644	—	—	—	—

No JSON data available for plots.

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