SCN Proteipedia

Hg_chrom4_TN10mRNA_8195

Organism: Heterodera glycines Gene Locus: chr4:6750399-6752253 Feature type: polypeptide

Protein Sequence

Length: 401

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.841	0.87	1.043	0.0	1.87	1.279	0.713	0.623	1.053	0.539	1.36	0.587	0.485	1.343	0.967	1.532	1.431	0.869	0.767	0.44	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7703	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PHPKRGR,RAPKRRA,KRGRRTNKSPNRAKKD,HPKRGRRTNKSPNRAKK	—	—	—	—	—	—	0.000	—	—	0.946	0.066	0.052	0.283	0.014	0.012	0.031	0.007	0.049	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008790	1.000	1.000	Hsc_gene_17567.t1	Hsc_gene_17567.t1	—	P26017.1 Polycomb group protein Pc [Drosophila melanogaster]	KAI1724683.1 chromo (CHRromatin organization MOdifier) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.911\|GO:0110165_0.906\|GO:0008150_0.869\|GO:0005622_0.857\|GO:0016020_0.832\|GO:0009987_0.830\|GO:0043226_0.823\|GO:0043229_0.801\|GO:0065007_0.749\|GO:0043227_0.748\|GO:0050789_0.743\|GO:0050794_0.721\|GO:0043231_0.717\|GO:0003674_0.696\|GO:0005488_0.696\|GO:0005634_0.661\|GO:0008152_0.653\|GO:0043170_0.653\|GO:0019222_0.645\|GO:0009058_0.644\|GO:0009059_0.644\|GO:0010467_0.644\|GO:0044237_0.644\|GO:0044249_0.644\|GO:0031323_0.641\|GO:0060255_0.636\|GO:0009889_0.626\|GO:0031326_0.621\|GO:0010468_0.618\|GO:0010556_0.618\|GO:0006139_0.612\|GO:0044238_0.612\|GO:0034654_0.603\|GO:0090304_0.603\|GO:0141187_0.600\|GO:0016070_0.596\|GO:0032774_0.596\|GO:0080090_0.586\|GO:0048519_0.581\|GO:0048523_0.574\|GO:0005515_0.562\|GO:0043228_0.557\|GO:0043232_0.557\|GO:0019219_0.554\|GO:0051252_0.553\|GO:2001141_0.549\|GO:0009892_0.539\|GO:0010605_0.534\|GO:0031324_0.534\|GO:0006351_0.533\|GO:0009890_0.529\|GO:0031327_0.529\|GO:0006355_0.528\|GO:0010558_0.528	IPR000953+11-63_12-70+\|IPR016197+3-65+\|IPR023779+29-49+\|IPR023780+12-61+\|IPR051219+8-276+	SM00298+11-63+	PF00385+12-61+Chromo_(CHRromatin_Organisation_MOdifier)_domain	—	PTHR22812+8-276+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-401	0.000	—	2d9u_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.662	43969.340	4.910	-10.500	31.920	5.486	60.100	39.900	14.963	16.958	54.863

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3513.089	9061.742	3317.660	3188.314	3198.293	3198.749	2239.005	5005.524	3431.466	1842.681	2523.589

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.678	-1.644	—	—	—	-0.505	0.547	-1.021	—	—	—	—	—

No JSON data available for plots.

Back to Browser