Hg_chrom4_TN10mRNA_8196
Organism: Heterodera glycines Gene Locus: chr4:6752330-6759186 Feature type: polypeptideProtein Sequence
Length: 1,244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 0.916 | 0.892 | 0.554 | 1.3 | 1.216 | 0.66 | 1.045 | 1.197 | 1.608 | 0.731 | 1.371 | 1.116 | 0.68 | 1.345 | 1.091 | 0.804 | 1.096 | 0.928 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7704
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RHRR,RKQIEERKSMRERAK,RKSMRERAKSMRARLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.263
|
0.148
|
0.051
|
0.676
|
0.399
|
0.513
|
0.379
|
0.121
|
0.380
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008791
|
1.000
|
1.000
|
Hsc_gene_17570.t1
|
Hsc_gene_17568.t1;Hsc_gene_17570.t1
|
— |
P34335.3 Probable phosphorylase b kinase regulatory subunit alpha [Caenorhabditis elegans]
|
KAI1724682.1 glycosyl hydrolases family 15 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005516|GO:0005975|GO:0005977
|
GO:0005575_0.856|GO:0110165_0.853|GO:0008150_0.770|GO:0005622_0.764|GO:0009987_0.717|GO:0005737_0.709|GO:0008152_0.583|GO:0044238_0.572|GO:0044237_0.563|GO:0003674_0.558
|
IPR008734+1-1239+|IPR008928+40-441+|IPR011613+8-930+|IPR012341+25-427+|IPR045583+1068-1186+
|
— |
PF00723+8-930+Glycosyl_hydrolases_family_15|PF19292+1068-1186+Phosphorylase_b_kinase_C-terminal_domain
|
G3DSA:1.50.10.10:FF:000004+19-416+Phosphorylase_b_kinase_regulatory_subunit
|
PTHR10749+1-1239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
648-692
|
2.000
|
1-647;693-1244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
140315.780
|
6.336
|
-3.000
|
26.206
|
9.887
|
47.428
|
52.572
|
13.505
|
12.701
|
46.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4053.755
|
8752.893
|
6285.893
|
4117.694
|
3656.565
|
3482.742
|
3270.542
|
5042.946
|
2826.216
|
2637.038
|
2718.115
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.707
|
-1.225
|
-0.502
|
-0.203
|
— | — |
0.428
|
-0.482
|
— | — | — | — | — |
No JSON data available for plots.