Hg_chrom4_TN10mRNA_8197
Organism: Heterodera glycines Gene Locus: chr4:6759238-6760488 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 1.023 | 0.727 | 0.966 | 1.0 | 1.333 | 0.952 | 0.6 | 1.422 | 1.514 | 0.727 | 1.882 | 2.333 | 1.615 | 0.898 | 1.257 | 0.197 | 0.848 | 0.308 | 0.235 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.158
|
0.783
|
0.083
|
0.348
|
0.086
|
0.082
|
0.113
|
0.065
|
0.085
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008792
|
1.000
|
1.000
|
Hsc_gene_17571.t1
|
Hsc_gene_17571.t1
|
— |
Q6DHK1.1 NAD(P)H-hydrate epimerase [Danio rerio]
|
KAI1724681.1 NAD(P)H-hydrate epimerase [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.765|GO:0110165_0.765|GO:0005622_0.634|GO:0016020_0.612|GO:0008150_0.595|GO:0005737_0.583|GO:0043226_0.583|GO:0043229_0.566|GO:0043227_0.558|GO:0043231_0.546|GO:0003674_0.545|GO:0009987_0.529
|
IPR004443+22-234_23-212_26-235_42-207+|IPR032976+14-245+|IPR036652+15-248_18-237+
|
— |
PF03853+42-207+YjeF-related_protein_N-terminus
|
— |
PTHR13232+14-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
27688.180
|
6.240
|
-0.500
|
20.400
|
10.800
|
40.000
|
60.000
|
10.400
|
10.000
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.