Hg_chrom4_TN10mRNA_8199
Organism: Heterodera glycines Gene Locus: chr4:6762899-6765013 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.288 | 0.769 | 0.601 | 1.71 | 2.204 | 1.271 | 0.787 | 0.826 | 1.102 | 1.117 | 1.252 | 1.458 | 0.689 | 0.636 | 1.181 | 1.181 | 0.542 | 1.252 | 0.0 | 1.215 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7707
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.447
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.130
|
0.719
|
0.104
|
0.408
|
0.139
|
0.197
|
0.200
|
0.007
|
0.590
|
0.301
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008794
|
1.000
|
1.000
|
Hsc_gene_17573.t1
|
Hsc_gene_17573.t1
|
— |
Q32L67.1 Glutaredoxin-2, mitochondrial [Bos taurus]
|
KAH7724534.1 glutaredoxin family protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.874|GO:0110165_0.865|GO:0005622_0.820|GO:0043226_0.772|GO:0016020_0.761|GO:0005737_0.755|GO:0043229_0.722|GO:0043227_0.714|GO:0008150_0.709|GO:0043231_0.659|GO:0009987_0.630|GO:0003674_0.513
|
IPR002109+29-96+|IPR014025+29-47_79-92_93-106+|IPR036249+18-116+
|
— |
PF00462+29-96+Glutaredoxin
|
— |
PTHR46679+1-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-121
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
13823.770
|
5.298
|
-2.000
|
32.231
|
8.264
|
52.066
|
47.934
|
15.702
|
16.529
|
43.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
564.904
|
416.991
|
789.221
|
678.919
|
665.830
|
632.787
|
662.370
|
757.077
|
320.181
|
505.120
|
425.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
0.566
|
— | — | — | — | — | — | — | — | — | — | — |
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