Hg_chrom4_TN10mRNA_8206
Organism: Heterodera glycines Gene Locus: chr4:6782980-6790252 Feature type: polypeptideProtein Sequence
Length: 1,274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 1.26 | 0.671 | 0.379 | 0.772 | 1.932 | 0.57 | 2.002 | 0.82 | 1.061 | 0.69 | 1.939 | 0.85 | 1.449 | 0.977 | 1.772 | 0.991 | 0.69 | 0.664 | 0.508 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7714
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,RKRILHLHAEKNRRF,KRRMEAVCAQYKRWRT,KRWRTYNRNRARKKCCRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.812
|
0.109
|
0.016
|
0.352
|
0.040
|
0.125
|
0.049
|
0.007
|
0.151
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003878
|
1.000
|
2.000
|
Hsc_gene_17580.t1;Hsc_gene_17580.t2
|
Hsc_gene_17580.t1;Hsc_gene_17580.t2
|
— |
P41846.2 Protein WBSCR14 homolog [Caenorhabditis elegans]
|
KAI1724669.1 protein WBSCR14 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.967|GO:0005575_0.929|GO:0110165_0.929|GO:0009987_0.927|GO:0065007_0.923|GO:0050789_0.921|GO:0050794_0.910|GO:0005622_0.881|GO:0008152_0.839|GO:0019222_0.839|GO:0043226_0.836|GO:0031323_0.834|GO:0044237_0.834|GO:0043170_0.832|GO:0044238_0.829|GO:0080090_0.829|GO:0009058_0.823|GO:0043229_0.823|GO:0060255_0.823|GO:0009059_0.822|GO:0010467_0.822|GO:0044249_0.822|GO:0009889_0.809|GO:0010468_0.809|GO:0010556_0.809|GO:0031326_0.809|GO:0006139_0.805|GO:0034654_0.804|GO:0016070_0.801|GO:0090304_0.801|GO:0141187_0.795|GO:0019219_0.794|GO:0032774_0.794|GO:0051252_0.794|GO:0006351_0.778|GO:0006355_0.771|GO:2001141_0.771|GO:0016020_0.763|GO:0043227_0.690|GO:0043231_0.671|GO:0006366_0.657|GO:0005634_0.648|GO:0006357_0.648|GO:0005737_0.619|GO:0003674_0.610|GO:0005488_0.588|GO:0048519_0.576|GO:0048523_0.563|GO:0032501_0.533|GO:0097159_0.522|GO:0009892_0.520|GO:0031324_0.520|GO:0010605_0.513|GO:0003676_0.511
|
IPR011598+1065-1118_1066-1119_1071-1124+|IPR036638+1058-1134_1058-1148+|IPR052207+602-1255+
|
SM00353+1071-1124+
|
PF00010+1066-1119+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR15741+602-1255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45;329-426;476-1078;1118-1174
|
4.000
|
46-328;427-475;1079-1117;1175-1274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
139914.020
|
8.916
|
38.500
|
21.664
|
9.655
|
53.061
|
46.939
|
13.344
|
8.320
|
54.003
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
2670.935
|
3851.295
|
2659.297
|
1873.733
|
1920.883
|
2287.036
|
4791.832
|
5128.021
|
2130.872
|
1645.148
|
1853.316
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.763
|
-1.177
|
-0.397
|
— |
0.266
|
1.077
|
1.060
|
— | — | — | — | — | — |
No JSON data available for plots.