SCN Proteipedia

Hg_chrom4_TN10mRNA_8207

Organism: Heterodera glycines Gene Locus: chr4:6790416-6795671 Feature type: polypeptide

Protein Sequence

Length: 974

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.003	1.027	0.691	0.531	1.044	1.553	0.917	1.283	0.821	1.027	0.716	1.208	0.656	1.382	1.488	1.525	0.909	0.747	0.711	0.604	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7715	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.882

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RKYVCQRNCGVETFDQKRR	21-41	0.985	9-42	0.970	—	—	0.000	—	—	0.230	0.099	0.028	0.591	0.161	0.345	0.215	0.022	0.574	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008801	1.000	1.000	Hsc_gene_17581.t3	Hsc_gene_17581.t3	—	P41885.2 Rabphilin-1 [Caenorhabditis elegans]	KAH7731135.1 RBF-1 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006886\|GO:0006887\|GO:0008021\|GO:0016020\|GO:0031267	GO:0005575_0.923\|GO:0110165_0.915\|GO:0008150_0.864\|GO:0065007_0.813\|GO:0009987_0.800\|GO:0050789_0.780\|GO:0016020_0.732\|GO:0005622_0.720\|GO:0043226_0.641\|GO:0016043_0.629\|GO:0071840_0.629\|GO:0043229_0.606\|GO:0050794_0.602\|GO:0051179_0.590\|GO:0043227_0.580\|GO:0051234_0.573\|GO:0003674_0.569\|GO:0006810_0.568\|GO:0005737_0.557\|GO:0005488_0.551\|GO:0043231_0.539\|GO:0030054_0.537\|GO:0071944_0.536\|GO:0007154_0.512\|GO:0023052_0.509\|GO:0005886_0.507	IPR000008+689-810_705-806_705-809_721-733_750-763_775-783_835-968_850-954_851-965+\|IPR001565+839-854_854-867_911-926_931-941+\|IPR010911+47-169+\|IPR011011+53-170+\|IPR013083+49-177+\|IPR017455+95-156+\|IPR030541+95-153+\|IPR035892+682-817_690-813_827-973_836-970+\|IPR041282+53-170+\|IPR043566+9-168+\|IPR047022+690-812+	SM00239+705-809_851-965+	PF00168+705-806_850-954+C2_domain\|PF02318+53-170+FYVE-type_zinc_finger	—	PTHR45729+9-168+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-11;180-691;972-974	2.000	12-179;692-971	5low_J	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.946	106297.180	9.369	31.500	24.641	7.906	51.335	48.665	14.579	10.062	54.415

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	2976.795	11961.025	4719.751	2564.686	1848.475	1500.826	3140.386	5765.120	1290.395	243.080	691.929

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.571	-2.359	-0.771	-0.503	-0.286	1.076	1.842	-0.736	2.267	—	—	—	—

No JSON data available for plots.

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