Hg_chrom4_TN10mRNA_8210
Organism: Heterodera glycines Gene Locus: chr4:6805250-6806528 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.244 | 0.486 | 0.369 | 1.426 | 1.371 | 1.082 | 0.535 | 1.188 | 1.229 | 1.458 | 1.887 | 1.783 | 0.411 | 0.437 | 1.451 | 0.877 | 0.567 | 0.823 | 0.157 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7718
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.608
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.456
|
0.177
|
0.078
|
0.795
|
0.174
|
0.068
|
0.222
|
0.004
|
0.404
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008804
|
1.000
|
1.000
|
Hsc_gene_17583.t1
|
Hsc_gene_17583.t1
|
— |
Q9WVA4.4 Transgelin-2 [Mus musculus]
|
KAH7731131.1 Protein CPN-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.843|GO:0005575_0.755|GO:0110165_0.746|GO:0009987_0.713|GO:0005622_0.683|GO:0043226_0.545|GO:0005737_0.523|GO:0003674_0.515|GO:0043229_0.509|GO:0016020_0.501
|
IPR000557+164-182_164-187+|IPR001715+24-132_26-130_26-131+|IPR003096+3-17_22-35_51-66_99-114_120-134_152-165_165-180+|IPR036872+9-139_15-174+|IPR050606+1-187+
|
SM00033+26-130+
|
PF00307+26-131+Calponin_homology_(CH)_domain|PF00402+164-187+Calponin_family_repeat
|
— |
PTHR47385+1-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;178-187
|
1.000
|
3-177
|
1wym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
20422.270
|
7.854
|
2.000
|
24.064
|
9.091
|
50.267
|
49.733
|
12.834
|
11.230
|
47.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
lightgreen
|
1471.936
|
899.884
|
1146.628
|
1046.423
|
1525.251
|
1714.917
|
2079.743
|
2155.242
|
883.600
|
1813.985
|
1415.248
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.512
|
0.184
|
0.287
|
— | — | — | — | — | — | — |
No JSON data available for plots.