SCN Proteipedia

Hg_chrom4_TN10mRNA_8211

Organism: Heterodera glycines Gene Locus: chr4:6806859-6810098 Feature type: polypeptide

Protein Sequence

Length: 763

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.762	0.671	1.001	0.768	1.223	0.639	0.515	1.048	1.281	1.417	0.874	1.85	1.274	0.781	1.525	1.067	0.816	1.251	0.504	1.156	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7719	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RNDKRGK	—	—	—	—	—	—	0.000	—	—	0.826	0.150	0.017	0.263	0.070	0.129	0.077	0.032	0.072	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008805	1.000	1.000	Hsc_gene_17584.t1	Hsc_gene_17584.t1	—	O08811.2 General transcription and DNA repair factor IIH helicase subunit XPD [Mus musculus]	KAI1713447.1 DEAD2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003677\|GO:0003678\|GO:0004386\|GO:0005524\|GO:0005634\|GO:0006139\|GO:0006289\|GO:0016818	GO:0008150_0.952\|GO:0009987_0.904\|GO:0005575_0.740\|GO:0050896_0.740\|GO:0110165_0.731\|GO:0051716_0.714\|GO:0008152_0.684\|GO:0006950_0.672\|GO:0044238_0.671\|GO:0016020_0.658\|GO:0005622_0.654\|GO:0033554_0.648\|GO:0043170_0.642\|GO:0006974_0.633\|GO:0043226_0.614\|GO:0006139_0.611\|GO:0090304_0.596\|GO:0043229_0.593\|GO:0006259_0.564\|GO:0043227_0.549\|GO:0003674_0.548\|GO:0065007_0.537\|GO:0043231_0.528\|GO:0006281_0.521\|GO:0050789_0.520\|GO:0044237_0.511	IPR001945+8-25_272-291_308-326_333-354_372-394_403-421_491-508_635-657_706-726+\|IPR002464+228-237+\|IPR006554+8-279+\|IPR006555+524-698_541-685+\|IPR010614+72-253+\|IPR010643+269-411+\|IPR013020+8-708+\|IPR014013+7-283+\|IPR027417+13-264_29-247_499-697+\|IPR042493+111-192+\|IPR045028+5-732+	SM00488+8-279+\|SM00491+541-685+	PF06733+72-253+DEAD_2\|PF06777+269-411+Helical_and_beta-bridge_domain\|PF13307+524-698+Helicase_C-terminal_domain	G3DSA:1.10.275.40:FF:000001+326-438+DNA_repair_helicase_(Rad3)\|G3DSA:1.10.30.20:FF:000001+111-192+DNA_repair_helicase_rad15\|G3DSA:3.40.50.300:FF:000128+439-472+Putative_DNA_repair_helicase_RAD3\|G3DSA:3.40.50.300:FF:000135+499-699+DNA_repair_helicase_RAD3,_putative\|G3DSA:3.40.50.300:FF:000381+16-289+TFIIH_basal_transcription_factor_complex_helicase_subunit	PTHR11472+5-732+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-763	6tun_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.600	87172.930	7.811	11.000	28.178	11.271	46.003	53.997	15.334	12.844	46.265

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightcyan	1358.163	2022.535	1459.011	1446.611	1432.079	1202.050	1762.302	1321.740	1328.400	953.289	1114.051

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.701	-0.621	—	—	-0.238	0.563	—	0.558	—	—	—	—	—

No JSON data available for plots.

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