Hg_chrom4_TN10mRNA_8213
Organism: Heterodera glycines Gene Locus: chr4:6811458-6812157 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.334 | 1.043 | 0.283 | 0.82 | 1.261 | 0.293 | 1.639 | 0.546 | 1.329 | 1.987 | 2.411 | 1.594 | 1.419 | 1.84 | 0.937 | 0.537 | 0.497 | 0.631 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7721
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKAVKDGYDPKTNRRLQK
|
16-36
|
0.999
|
12-32
|
0.999
|
— | — |
0.000
|
— | — |
0.053
|
0.849
|
0.025
|
0.122
|
0.018
|
0.022
|
0.017
|
0.015
|
0.033
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008807
|
1.000
|
1.000
|
Hsc_gene_17586.t1
|
Hsc_gene_17586.t1
|
— | — |
KAH7731221.1 Protein Y50D7A.9 [Aphelenchus avenae]
|
MCD6477410
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002876+17-117+|IPR017856+37-117+|IPR029072+41-115+|IPR049083+43-111+
|
— |
PF20772+43-111+TACO1/YebC_protein_N-terminal_domain
|
— |
PTHR12532+17-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-122
|
1.000
|
1-39
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
14359.700
|
11.101
|
16.000
|
36.066
|
10.656
|
56.557
|
43.443
|
25.410
|
10.656
|
40.984
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
464.803
|
473.714
|
430.725
|
706.361
|
841.071
|
554.691
|
655.978
|
426.281
|
403.203
|
197.801
|
285.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.368
|
0.439
|
0.824
|
0.219
|
-0.586
|
0.253
|
-0.484
|
0.765
|
— | — | — | — | — |
No JSON data available for plots.