Hg_chrom4_TN10mRNA_8215
Organism: Heterodera glycines Gene Locus: chr4:6819725-6821302 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.203 | 0.522 | 0.991 | 0.958 | 1.695 | 0.753 | 1.293 | 0.575 | 1.126 | 0.784 | 1.69 | 1.357 | 1.382 | 1.173 | 1.519 | 0.848 | 0.74 | 1.105 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7723
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
SSRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.924
|
0.079
|
0.002
|
0.180
|
0.068
|
0.013
|
0.030
|
0.002
|
0.012
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008809
|
1.000
|
1.000
|
Hsc_gene_17588.t1
|
Hsc_gene_17588.t1
|
— |
Q22292.3 T-box transcription factor tbx-8 [Caenorhabditis elegans]
|
KAI1724661.1 t-box domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0005634|GO:0006355|GO:0045893
|
GO:0008150_0.925|GO:0005575_0.808|GO:0110165_0.779|GO:0009987_0.768|GO:0032502_0.762|GO:0048856_0.762|GO:0065007_0.747|GO:0005622_0.740|GO:0050789_0.740|GO:0050794_0.729|GO:0032501_0.710|GO:0003674_0.707|GO:0005488_0.707|GO:0043226_0.707|GO:0043229_0.698|GO:0016020_0.681|GO:0007275_0.672|GO:0043227_0.636|GO:0043231_0.629|GO:0008152_0.600|GO:0019222_0.600|GO:0031323_0.599|GO:0044237_0.599|GO:0043170_0.595|GO:0060255_0.589|GO:0009058_0.577|GO:0009059_0.577|GO:0044249_0.577|GO:0010467_0.576|GO:0009889_0.573|GO:0031326_0.573|GO:0005634_0.566|GO:0010468_0.562|GO:0010556_0.562|GO:0044238_0.561|GO:0080090_0.561|GO:0097159_0.554|GO:0003676_0.544|GO:0006139_0.533|GO:0034654_0.533|GO:0016070_0.531|GO:0032774_0.531|GO:0090304_0.531|GO:0141187_0.531|GO:0019219_0.524|GO:0051252_0.524|GO:0003677_0.522|GO:0006351_0.513|GO:2001141_0.509|GO:0009653_0.508|GO:0006355_0.507|GO:0048731_0.504
|
IPR001699+29-308+|IPR008967+42-223+|IPR018186+51-70+|IPR036960+31-224+|IPR046360+41-228_44-223_46-223_59-83_143-152_162-176_194-207_215-223+
|
SM00425+41-228+
|
PF00907+44-223+T-box
|
— |
PTHR11267+29-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
323-348
|
1.000
|
1-322
|
1xbr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
38936.100
|
8.773
|
12.500
|
22.126
|
11.494
|
49.713
|
50.287
|
13.506
|
8.621
|
51.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
244.158
|
27.028
|
19.982
|
8.989
|
15.273
|
18.724
|
390.080
|
14.084
|
1.382
|
881.844
|
504.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.671
|
-1.726
|
-1.039
|
— | — |
4.388
|
— |
4.937
|
-9.520
|
— |
-5.308
|
— | — |
No JSON data available for plots.