SCN Proteipedia

Hg_chrom4_TN10mRNA_8216

Organism: Heterodera glycines Gene Locus: chr4:6824425-6827193 Feature type: polypeptide

Protein Sequence

Length: 473

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.86	1.278	0.999	0.948	1.163	1.301	0.453	1.374	1.362	1.143	0.513	2.487	1.586	0.813	1.683	1.238	0.589	0.865	0.488	0.373	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7724	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.666

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	20-40	0.909	5-35	0.976	—	—	0.000	—	—	0.590	0.387	0.012	0.537	0.083	0.134	0.141	0.090	0.124	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008810	1.000	1.000	Hsc_gene_17589.t2	Hsc_gene_17589.t1;Hsc_gene_17589.t2;Hsc_gene_17589.t3	—	—	KAF7637443.1 KH_10 domain-containing protein [Meloidogyne graminicola]	No	-0.180

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723	GO:0008150_0.950\|GO:0005575_0.885\|GO:0009987_0.884\|GO:0110165_0.878\|GO:0065007_0.862\|GO:0003674_0.859\|GO:0050789_0.849\|GO:0050794_0.835\|GO:0005622_0.820\|GO:0005488_0.802\|GO:0008152_0.797\|GO:0032501_0.786\|GO:0044238_0.785\|GO:0043170_0.777\|GO:0032502_0.775\|GO:0048856_0.775\|GO:0044237_0.771\|GO:0009058_0.764\|GO:0005515_0.760\|GO:0048518_0.756\|GO:0019222_0.753\|GO:0007275_0.751\|GO:0044249_0.751\|GO:0071840_0.749\|GO:0043226_0.748\|GO:0016043_0.747\|GO:0031323_0.747\|GO:0009059_0.744\|GO:0048522_0.741\|GO:0005737_0.739\|GO:0006139_0.738\|GO:0060255_0.738\|GO:0010467_0.736\|GO:0043229_0.733\|GO:0048869_0.731\|GO:0009889_0.727\|GO:0030154_0.726\|GO:0031326_0.726\|GO:0034654_0.726\|GO:0090304_0.722\|GO:0010556_0.720\|GO:0010468_0.719\|GO:0048468_0.718\|GO:0141187_0.718\|GO:0016070_0.716\|GO:0009893_0.714\|GO:0032774_0.713\|GO:0010604_0.709\|GO:0031325_0.709\|GO:0006996_0.705\|GO:0048513_0.705\|GO:0009891_0.704\|GO:0051239_0.704\|GO:0022414_0.703\|GO:0031328_0.702\|GO:0010557_0.700\|GO:0050793_0.698\|GO:0040007_0.695\|GO:0051128_0.695\|GO:0003006_0.690\|GO:0048589_0.689\|GO:0061024_0.688\|GO:0019953_0.687\|GO:0010628_0.686\|GO:0051240_0.686\|GO:0009790_0.685\|GO:0009791_0.685\|GO:0000280_0.684\|GO:0007049_0.684\|GO:0022402_0.684\|GO:0048285_0.684\|GO:0051094_0.683\|GO:0048609_0.682\|GO:0051130_0.682\|GO:0051301_0.681\|GO:0007276_0.680\|GO:0051726_0.680\|GO:0000278_0.679\|GO:0033043_0.679\|GO:0040008_0.679\|GO:0140014_0.679\|GO:1903047_0.679\|GO:0016071_0.678\|GO:0048232_0.678\|GO:2000241_0.678\|GO:0006396_0.677\|GO:0009792_0.677\|GO:0010564_0.677\|GO:0051321_0.677\|GO:0140013_0.677\|GO:1903046_0.677\|GO:0007281_0.676\|GO:0007283_0.676\|GO:0022412_0.676\|GO:0048638_0.676\|GO:0006397_0.675\|GO:0007346_0.675\|GO:0000910_0.674\|GO:0045787_0.674\|GO:0090148_0.674\|GO:0098772_0.674\|GO:0000279_0.670\|GO:0000281_0.670\|GO:0002119_0.670\|GO:0002164_0.670\|GO:0007088_0.670\|GO:0007127_0.670\|GO:0007134_0.670\|GO:0007530_0.670\|GO:0010638_0.670\|GO:0017145_0.670\|GO:0018992_0.670\|GO:0022403_0.670\|GO:0035264_0.670\|GO:0040014_0.670\|GO:0040018_0.670\|GO:0040020_0.670\|GO:0040021_0.670\|GO:0040025_0.670\|GO:0042006_0.670\|GO:0042078_0.670\|GO:0044848_0.670\|GO:0045836_0.670\|GO:0045840_0.670\|GO:0045927_0.670\|GO:0048639_0.670\|GO:0051326_0.670\|GO:0051445_0.670\|GO:0051446_0.670\|GO:0051783_0.670\|GO:0051785_0.670\|GO:0060631_0.670\|GO:0060903_0.670\|GO:0061640_0.670\|GO:0061982_0.670\|GO:0090068_0.670\|GO:0098762_0.670\|GO:0098764_0.670\|GO:0180011_0.670\|GO:2000243_0.670\|GO:0030234_0.664\|GO:0140677_0.663\|GO:0008047_0.655\|GO:0019904_0.655\|GO:1990749_0.650\|GO:0032991_0.642\|GO:0043228_0.612\|GO:0043232_0.612\|GO:0099080_0.572\|GO:1902494_0.570\|GO:0140535_0.554\|GO:0061695_0.551\|GO:1990234_0.551\|GO:0035770_0.547\|GO:0036464_0.547\|GO:0030880_0.540\|GO:0031379_0.540\|GO:0043186_0.540\|GO:0045495_0.540\|GO:0060293_0.540	IPR004088+238-303+\|IPR036612+235-304+\|IPR041194+306-386+	—	PF00013+238-303+KH_domain\|PF17905+306-386+GLD-3_KH_domain_5	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	447-473	1.000	1-446	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.640	53944.620	6.802	2.500	26.850	10.359	49.683	50.317	14.376	12.474	47.146

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	193.771	51.426	112.294	104.792	282.408	411.983	899.763	209.061	10.970	62.623	40.486

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.891	0.889	—	1.400	0.558	1.138	-1.091	2.251	—	—	—	—	—

No JSON data available for plots.

Back to Browser