Hg_chrom4_TN10mRNA_8218
Organism: Heterodera glycines Gene Locus: chr4:6831311-6834941 Feature type: polypeptideProtein Sequence
Length: 642
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 1.05 | 0.708 | 0.698 | 1.168 | 2.436 | 0.705 | 1.791 | 0.623 | 1.2 | 0.543 | 1.283 | 0.779 | 1.318 | 1.462 | 1.268 | 0.792 | 0.543 | 1.677 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7726
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.507
|
0.157
|
0.016
|
0.613
|
0.095
|
0.151
|
0.096
|
0.158
|
0.105
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008811
|
1.000
|
1.000
|
Hsc_gene_17591.t2
|
Hsc_gene_17591.t1;Hsc_gene_17591.t2
|
— |
A2AG06.1 Meiosis-specific coiled-coil domain-containing protein MEIOC [Mus musculus]
|
KAI1713445.1 meiosis-specific coiled-coil domain-containing protein MEIOC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051321
|
— |
IPR027963+429-640_448-611+
|
— |
PF15189+448-611+Meiosis-specific_coiled-coil_domain-containing_protein_MEIOC
|
— |
PTHR33861+429-640+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-392
|
1.000
|
393-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
72163.620
|
7.422
|
10.500
|
25.234
|
9.969
|
52.960
|
47.040
|
14.330
|
10.903
|
48.910
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1089.255
|
778.813
|
108.453
|
3385.781
|
3661.645
|
1790.300
|
460.761
|
411.220
|
258.081
|
598.065
|
452.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.075
|
1.983
|
5.074
|
— |
-1.015
|
-1.951
|
-2.234
|
— | — |
3.896
|
— | — | — |
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