Hg_chrom4_TN10mRNA_8219
Organism: Heterodera glycines Gene Locus: chr4:6836757-6840409 Feature type: polypeptideProtein Sequence
Length: 737
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.168 | 0.839 | 0.983 | 1.199 | 1.357 | 0.598 | 1.221 | 1.297 | 1.247 | 0.925 | 0.958 | 1.621 | 0.939 | 1.052 | 1.337 | 0.601 | 0.946 | 1.461 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7727
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRCPYPHPLTFFVYGREKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.313
|
0.167
|
0.018
|
0.655
|
0.190
|
0.537
|
0.258
|
0.006
|
0.423
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008812
|
1.000
|
1.000
|
Hsc_gene_17592.t1
|
Hsc_gene_17592.t1
|
— | — |
KAI1724656.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.800|GO:0009987_0.719|GO:0005575_0.695|GO:0110165_0.693|GO:0003674_0.692|GO:0005622_0.597|GO:0065007_0.590|GO:0005488_0.588|GO:0050789_0.540|GO:0050794_0.523|GO:0005737_0.502
|
IPR000159+531-611+|IPR000198+289-490_306-495_309-456+|IPR001849+68-179_190-294+|IPR008936+285-496_304-493+|IPR029071+519-610+|IPR052227+35-726+
|
SM00233+68-179_190-294+|SM00324+306-495+
|
PF00620+309-456+RhoGAP_domain
|
— |
PTHR45899+35-726+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-737
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
83923.680
|
6.950
|
5.000
|
25.509
|
12.483
|
48.847
|
51.153
|
13.704
|
11.805
|
47.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2757.138
|
1518.238
|
1441.172
|
1122.695
|
944.698
|
945.446
|
1498.524
|
2052.886
|
561.933
|
8069.656
|
4852.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.304
|
-0.573
|
-0.252
|
-0.281
|
— |
0.674
|
1.019
|
— |
-3.948
|
— | — | — | — |
No JSON data available for plots.