Hg_chrom4_TN10mRNA_8222
Organism: Heterodera glycines Gene Locus: chr4:6850920-6854953 Feature type: polypeptideProtein Sequence
Length: 728
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.894 | 1.074 | 0.379 | 0.984 | 1.444 | 0.327 | 1.305 | 1.435 | 2.042 | 0.833 | 1.697 | 1.03 | 0.977 | 1.093 | 0.962 | 0.788 | 1.02 | 0.634 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7730
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKASRPTASVPSSAKIKFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.407
|
0.090
|
0.006
|
0.532
|
0.127
|
0.385
|
0.333
|
0.069
|
0.209
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008815
|
1.000
|
1.000
|
Hsc_gene_17596.t1
|
Hsc_gene_17596.t1
|
— |
Q5ZIW5.1 Protein VAC14 homolog [Gallus gallus]
|
KAI1721787.1 vacuolar 14 fab1-binding region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006661|GO:0070772
|
GO:0005575_0.922|GO:0110165_0.915|GO:0005622_0.862|GO:0005737_0.797|GO:0016020_0.735|GO:0043226_0.686|GO:0043229_0.666|GO:0043227_0.640|GO:0043231_0.621|GO:0008150_0.604|GO:0005886_0.564|GO:0071944_0.564|GO:0009987_0.557|GO:0005773_0.527|GO:0003674_0.508
|
IPR011989+4-254_255-511+|IPR016024+2-660+|IPR021841+457-663+|IPR026825+1-720+
|
— |
PF11916+457-663+Vacuolar_protein_14_C-terminal_Fig4p_binding|PF12755+65-162+Vacuolar_14_Fab1-binding_region
|
— |
PTHR16023+1-720+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
713-728
|
1.000
|
1-712
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
82882.460
|
6.723
|
2.500
|
25.275
|
9.478
|
46.291
|
53.709
|
13.462
|
11.813
|
43.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
964.399
|
894.684
|
1039.030
|
923.025
|
948.715
|
780.346
|
1570.133
|
870.123
|
276.933
|
1376.776
|
905.415
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.268
|
1.019
|
— |
0.993
|
— | — | — | — | — |
No JSON data available for plots.