Hg_chrom4_TN10mRNA_8223
Organism: Heterodera glycines Gene Locus: chr4:6855272-6857135 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 1.168 | 0.664 | 1.26 | 0.304 | 0.82 | 0.815 | 0.0 | 1.421 | 1.975 | 0.415 | 1.343 | 1.903 | 0.439 | 0.932 | 0.848 | 1.347 | 1.73 | 0.702 | 1.343 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7731
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
21-65
|
0.963
|
14-38
|
0.999
|
— | — |
0.000
|
— | — |
0.079
|
0.119
|
0.039
|
0.103
|
0.451
|
0.734
|
0.420
|
0.074
|
0.452
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008816
|
1.000
|
1.000
|
Hsc_gene_17597.t1
|
Hsc_gene_17597.t1;Hsc_gene_17597.t2
|
— |
A8XI14.1 Sugar transporter SWEET1 [Caenorhabditis briggsae]
|
KAF7638913.1 Sugar transporter SWEET [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051119
|
GO:0008150_0.867|GO:0009987_0.737|GO:0005575_0.715|GO:0110165_0.706|GO:0016020_0.668|GO:0051179_0.628|GO:0071944_0.622|GO:0005886_0.615|GO:0003674_0.608|GO:0006810_0.597|GO:0051234_0.597|GO:0055085_0.553
|
IPR004316+9-90_127-209+|IPR047664+16-210+
|
— |
PF03083+9-90_127-209+Sugar_efflux_transporter_for_intercellular_exchange
|
G3DSA:1.20.1280.290:FF:000004+124-213+Sugar_transporter_SWEET|G3DSA:1.20.1280.290:FF:000010+7-96+Sugar_transporter_SWEET
|
PTHR10791+16-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
24389.860
|
8.273
|
4.000
|
12.785
|
12.329
|
35.160
|
64.840
|
7.306
|
5.479
|
52.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
919.107
|
906.822
|
717.585
|
802.257
|
624.176
|
676.063
|
482.454
|
711.672
|
531.594
|
1777.010
|
1243.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.567
|
-0.314
|
0.270
|
-0.393
|
— |
-0.478
|
— |
-0.421
|
— | — | — | — | — |
No JSON data available for plots.