Hg_chrom4_TN10mRNA_8224
Organism: Heterodera glycines Gene Locus: chr4:6857574-6858807 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.011 | 1.344 | 1.199 | 1.812 | 0.892 | 0.776 | 1.087 | 1.643 | 1.116 | 0.725 | 1.79 | 1.329 | 0.669 | 1.42 | 0.807 | 0.57 | 0.593 | 0.669 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7732
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.651
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRCFELSVMVAEPGFRRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.644
|
0.285
|
0.038
|
0.558
|
0.125
|
0.200
|
0.213
|
0.213
|
0.103
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008817
|
1.000
|
1.000
|
Hsc_gene_17598.t1
|
Hsc_gene_17598.t1;Hsc_gene_17598.t2
|
— |
Q9BKR0.2 N-acetyltransferase 9-like protein [Caenorhabditis elegans]
|
KAI1715347.1 acetyltransferase (GNAT) domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008080|GO:0016747
|
GO:0005575_0.869|GO:0110165_0.685|GO:0005622_0.646|GO:0003674_0.628|GO:0003824_0.527|GO:0008150_0.504
|
IPR000182+15-185+|IPR016181+10-186+|IPR039135+1-220+
|
— |
PF13302+15-185+Acetyltransferase_(GNAT)_domain
|
— |
PTHR13256+1-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
26098.490
|
4.533
|
-12.500
|
32.174
|
9.565
|
49.130
|
50.870
|
13.913
|
18.261
|
45.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
345.923
|
138.479
|
147.228
|
149.087
|
160.544
|
137.453
|
133.071
|
90.084
|
483.848
|
792.048
|
659.962
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-0.718
|
0.707
|
— | — | — | — | — |
No JSON data available for plots.