SCN Proteipedia

Hg_chrom4_TN10mRNA_8225

Organism: Heterodera glycines Gene Locus: chr4:6859184-6874056 Feature type: polypeptide

Protein Sequence

Length: 1,875

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.775	1.389	0.737	3.034	0.836	1.19	0.984	0.853	0.569	0.757	0.606	0.847	1.215	1.456	1.143	1.211	1.005	0.808	0.574	0.894	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7733	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KKFLCCGKRPSEKKVAK,KRIIKGRVGRRCERKCPR,RGRNGGARERPGRRGAIVRRDPTK	7-27	0.997	1-21	0.997	—	—	0.001	—	—	0.227	0.043	0.040	0.221	0.070	0.142	0.149	0.034	0.173	0.826

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008818	1.000	1.000	Hsc_gene_17599.t1	Hsc_gene_17599.t1	—	Q02445.1 Tissue factor pathway inhibitor [Rattus norvegicus]	KAI1724653.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004867	GO:0005575_0.786\|GO:0008150_0.782\|GO:0110165_0.777\|GO:0003674_0.650\|GO:0009987_0.595\|GO:0065007_0.529\|GO:0071944_0.507	IPR000742+1417-1454+\|IPR002223+465-527_467-526_475-527_579-652_614-651_616-651_695-709_696-749_697-749_698-748_803-858_804-857_805-857_832-842_842-857_910-965_911-964_912-964+\|IPR006149+220-283_272-319_1345-1396_1400-1453+\|IPR006150+528-575_654-692_755-799_860-906_967-1014_1019-1066_1071-1120_1123-1171_1182-1229_1246-1292_1295-1339_1354-1386_1409-1443_1487-1535_1622-1663_1673-1720+\|IPR020901+726-744_835-853_942-960+\|IPR028150+655-692_756-799_861-906_969-1014_1020-1065_1073-1120_1125-1171_1183-1229_1247-1292_1296-1339_1489-1535_1624-1663_1674-1720+\|IPR036880+458-529_465-527_594-655_608-652_688-751_692-750_794-859_803-860_902-967_908-968+\|IPR053014+1674-1819+	SM00131+465-527_579-652_696-749_803-858_910-965+\|SM00289+528-575_654-692_755-799_860-906_967-1014_1019-1066_1071-1120_1123-1171_1182-1229_1246-1292_1295-1339_1354-1386_1409-1443_1487-1535_1622-1663_1673-1720+	PF00014+475-527_614-651_697-749_804-857_911-964+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain\|PF01683+220-283_272-319_1345-1396_1400-1453+EB_module\|PF14625+655-692_756-799_861-906_969-1014_1020-1065_1073-1120_1125-1171_1183-1229_1247-1292_1296-1339_1489-1535_1624-1663_1674-1720+Lustrin,_cysteine-rich_repeated_domain	—	PTHR46339+1674-1819+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1540-1615;1723-1875	2.000	1-1539;1616-1722	1tfx_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.914	203984.100	7.426	26.000	20.373	9.867	45.600	54.400	11.307	9.067	61.280

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	420.149	468.700	483.352	329.739	286.208	204.909	591.850	206.701	95.621	802.139	499.346

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.187	-0.645	-0.442	-0.236	-0.468	1.542	—	1.661	—	—	—	—	—

No JSON data available for plots.

Back to Browser