SCN Proteipedia

Hg_chrom4_TN10mRNA_8226

Organism: Heterodera glycines Gene Locus: chr4:6874146-6882677 Feature type: polypeptide

Protein Sequence

Length: 1,476 (Signal peptide: 1-17)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.772	1.024	0.764	3.201	1.028	1.355	1.008	1.05	0.678	0.623	0.524	0.678	1.449	1.394	1.701	1.142	0.711	0.79	0.99	0.458	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7734	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.509

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	nucleus	KRSR,RKSK,RRCSDGRLPLLLPRVRRP,RRGAEKQKQKAGEKLRRRA,RRKCQCIGGRAAFRNRCRR,RKCQCIGGRAAFRNRCRRN,RRTETKANAQQHFVGSRKK,DKEGKRRGAEKQKQKAGEKLRRR	—	—	—	—	1-17	0.994	1.000	0.000	0.000	0.159	0.087	0.038	0.258	0.057	0.131	0.152	0.164	0.238	0.876

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002106	2.000	2.000	Hsc_gene_17601.t1;Hsc_gene_22995.t1	Hsc_gene_17600.t1	—	Q868Z9.2 Papilin [Drosophila melanogaster]	XP_024506776.1 Proteinase inhibitor I2, Kunitz metazoa domain and EB domain and Cysteine-rich repeat and Lustrin, cysteine-rich repeated domain-containing protein [Strongyloides ratti];CEF67576.1 Proteinase inhibitor I2, Kunitz metazoa domain and EB domain and Cysteine-rich repeat and Lustrin, cysteine-rich repeated domain-containing protein [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004867	GO:0008150_0.780\|GO:0005575_0.770\|GO:0110165_0.770\|GO:0003674_0.632\|GO:0009987_0.565\|GO:0065007_0.528	IPR002223+227-282_228-282_229-281_337-412_363-411_371-411_456-470_457-510_458-510_459-509_561-616_562-615_563-615_590-600_671-726_672-725_673-725_710-725+\|IPR006149+59-112+\|IPR006150+283-333_414-453_516-557_618-667_728-786_791-838_843-896_899-949_963-1010_1035-1082_1085-1132_1313-1361_1404-1444+\|IPR020901+487-505_593-611_703-721+\|IPR028150+415-453_518-557_730-786_792-837_901-949_964-1009_1036-1081_1086-1132+\|IPR036880+219-284_226-282_363-414_370-413_448-511_453-511_554-616_560-618_662-727_670-729+\|IPR053014+24-1362+	SM00131+227-282_337-412_457-510_561-616_671-726+\|SM00289+283-333_414-453_516-557_618-667_728-786_791-838_843-896_899-949_963-1010_1035-1082_1085-1132_1313-1361_1404-1444+	PF00014+228-282_371-411_458-510_562-615_672-725+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain\|PF01683+59-112+EB_module\|PF14625+415-453_518-557_730-786_792-837_901-949_964-1009_1036-1081_1086-1132+Lustrin,_cysteine-rich_repeated_domain	—	PTHR46339+24-1362+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1143-1192	2.000	1-1142;1193-1476	9han_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.907	162952.140	7.776	36.500	24.255	10.163	46.274	53.726	13.889	10.366	57.791

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	426.024	62.785	197.987	87.299	50.441	93.579	103.523	48.822	63.374	1574.663	926.967

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.428	0.338	-1.073	-0.826	0.908	—	-1.044	1.230	-4.757	—	-4.678	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser