Hg_chrom4_TN10mRNA_8232
Organism: Heterodera glycines Gene Locus: chr4:6906183-6906616 Feature type: polypeptideProtein Sequence
Length: 104
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.447 | 0.894 | 0.35 | 1.658 | 1.603 | 0.493 | 0.572 | 2.404 | 1.068 | 1.819 | 1.02 | 1.697 | 0.801 | 0.925 | 1.766 | 0.824 | 0.946 | 0.146 | 0.74 | 1.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.440
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RRLPEANYTPALKKLKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.180
|
0.682
|
0.196
|
0.308
|
0.355
|
0.288
|
0.445
|
0.211
|
0.365
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008821
|
1.000
|
1.000
|
Hsc_gene_17608.t1
|
Hsc_gene_17608.t1
|
— |
Q8MNU7.1 COX assembly mitochondrial protein 2 homolog [Caenorhabditis elegans]
|
NP_001379778.1 COX assembly mitochondrial protein 2 homolog [Caenorhabditis elegans];Q8MNU7.1 COX assembly mitochondrial protein 2 homolog [Caenorhabditis elegans];CCD66790.1 COX assembly mitochondrial protein 2 homolog [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.911|GO:0005622_0.832|GO:0043226_0.795|GO:0016020_0.790|GO:0043229_0.774|GO:0005737_0.750|GO:0043227_0.742|GO:0043231_0.724|GO:0005739_0.566
|
IPR013892+1-55+
|
— |
PF08583+1-55+Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-104
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
12353.300
|
8.618
|
6.500
|
31.731
|
15.385
|
49.038
|
50.962
|
20.192
|
11.538
|
36.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
452.298
|
208.587
|
314.145
|
291.754
|
327.179
|
283.770
|
238.023
|
280.369
|
144.970
|
1141.139
|
714.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.359
|
0.347
|
— | — | — | — | — | — |
-3.071
|
— | — | — | — |
No JSON data available for plots.