Hg_chrom4_TN10mRNA_8240
Organism: Heterodera glycines Gene Locus: chr4:6939099-6942365 Feature type: polypeptideProtein Sequence
Length: 576
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.565 | 0.686 | 0.979 | 0.539 | 1.215 | 1.692 | 0.723 | 1.389 | 0.617 | 1.197 | 0.71 | 1.021 | 1.061 | 1.068 | 1.772 | 1.364 | 1.053 | 0.868 | 1.603 | 0.766 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7746
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.559
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRKRRRSGGGDGLRKRLE,GGGQRQRRKRRRSGGGDGLRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.240
|
0.047
|
0.002
|
0.237
|
0.405
|
0.404
|
0.475
|
0.028
|
0.480
|
0.221
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008827
|
1.000
|
1.000
|
Hsc_gene_17615.t1
|
Hsc_gene_17615.t1
|
— |
Q09231.3 BRICHOS domain-containing protein C09F5.1 [Caenorhabditis elegans]
|
KAI1713428.1 BRICHOS domain-containing protein C09F5.1 [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-229;523-576
|
1.000
|
230-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
65919.940
|
8.235
|
12.000
|
28.819
|
11.285
|
54.340
|
45.660
|
16.146
|
12.674
|
48.090
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
783.009
|
467.890
|
191.408
|
1283.116
|
1738.515
|
1762.882
|
1137.658
|
737.558
|
267.977
|
480.047
|
389.159
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.521
|
1.318
|
2.856
|
0.406
|
— |
-0.622
|
-1.371
|
0.771
|
— | — |
3.768
|
— | — |
No JSON data available for plots.