Hg_chrom4_TN10mRNA_8243
Organism: Heterodera glycines Gene Locus: chr4:6967575-6967854 Feature type: polypeptideProtein Sequence
Length: 65
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.358 | 1.431 | 0.559 | 1.061 | 1.282 | 0.394 | 0.549 | 0.769 | 1.709 | 1.455 | 0.699 | 3.62 | 2.137 | 1.183 | 2.512 | 0.659 | 0.252 | 0.233 | 2.367 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7748
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.655
|
0.125
|
0.424
|
0.089
|
0.092
|
0.098
|
0.019
|
0.055
|
0.460
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002110
|
3.000
|
1.000
|
Hsc_gene_974.t1
|
Hsc_gene_974.t1
|
— |
Q9T034.3 Phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Arabidopsis thaliana]
|
KAI6243917.1 Phenylalanine--tRNA ligase [Aphelenchoides fujianensis]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000049|GO:0004812|GO:0005524|GO:0043039
|
GO:0005575_0.822|GO:0110165_0.814|GO:0005622_0.638|GO:0008150_0.619|GO:0005737_0.576|GO:0009987_0.545
|
IPR002319+25-51+|IPR045864+7-65+
|
— |
PF01409+25-51+tRNA_synthetases_class_II_core_domain_(F)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-65
|
8s8b_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
7936.350
|
9.876
|
4.500
|
29.231
|
15.385
|
43.077
|
56.923
|
18.462
|
10.769
|
33.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
765.434
|
1824.597
|
939.456
|
546.883
|
361.351
|
372.992
|
274.853
|
860.704
|
254.636
|
1214.984
|
803.406
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.187
|
-1.875
|
-0.672
|
-0.630
|
— |
-0.432
|
1.101
|
-1.506
|
— | — | — | — | — |
No JSON data available for plots.