SCN Proteipedia

Hg_chrom4_TN10mRNA_8245

Organism: Heterodera glycines Gene Locus: chr4:6975714-6980701 Feature type: polypeptide

Protein Sequence

Length: 842

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.939	0.718	0.864	0.45	1.623	1.096	0.806	1.069	1.267	1.156	0.99	1.607	1.188	0.594	1.479	0.967	0.993	0.882	0.457	0.734	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7750	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.478

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RYAKRRA,KRAKIAETYAISVDRYKKF	—	—	—	—	—	—	0.000	—	—	0.847	0.260	0.014	0.272	0.021	0.018	0.033	0.038	0.033	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_9506.t1;Hsc_gene_9506.t2;Hsc_gene_975.t1	—	P49739.2 Maternal DNA replication licensing factor mcm3 [Xenopus laevis]	KAI6191429.1 DNA replication licensing factor MCM3 [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000049\|GO:0003677\|GO:0004812\|GO:0005524\|GO:0006270\|GO:0032508\|GO:0042555\|GO:0043039	GO:0005575_0.862\|GO:0110165_0.827\|GO:0008150_0.747\|GO:0005622_0.746\|GO:0016020_0.717\|GO:0009987_0.688\|GO:0043226_0.648\|GO:0043229_0.632\|GO:0043227_0.610\|GO:0008152_0.587\|GO:0043231_0.571\|GO:0044238_0.568\|GO:0044237_0.556\|GO:0009058_0.554\|GO:0043170_0.546\|GO:0044249_0.535\|GO:0009059_0.522\|GO:0006139_0.520\|GO:0005737_0.510\|GO:0090304_0.506	IPR001208+9-233_22-229_63-78_123-137_152-165_176-188_203-211+\|IPR002319+699-827+\|IPR006195+727-842+\|IPR008046+192-202_225-235_366-381+\|IPR027417+3-398_32-394+\|IPR031327+1-379_4-472+\|IPR040724+545-579+\|IPR040725+595-649+\|IPR041562+292-374+\|IPR045864+661-837_688-827+	SM00350+1-379+	PF00493+9-233+MCM_P-loop_domain\|PF01409+699-827+tRNA_synthetases_class_II_core_domain_(F)\|PF17855+292-374+MCM_AAA-lid_domain\|PF18552+545-579+PheRS_DNA_binding_domain_1\|PF18553+595-649+PheRS_DNA_binding_domain_3	—	PTHR11630+4-472+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;387-459	2.000	10-386;460-842	8ouw_3	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.556	94808.860	6.784	3.000	30.404	9.501	50.594	49.406	15.914	14.489	45.724

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1415.645	1846.301	2146.449	984.972	1101.727	1032.909	1309.757	2005.907	265.226	2084.022	1304.538

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.044	-1.015	0.130	—	0.353	0.853	-0.472	—	—	—	—	4.384

No JSON data available for plots.

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