Hg_chrom4_TN10mRNA_8246
Organism: Heterodera glycines Gene Locus: chr4:6980733-6985017 Feature type: polypeptideProtein Sequence
Length: 827
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 0.787 | 0.879 | 0.625 | 0.988 | 1.333 | 0.59 | 1.149 | 0.887 | 0.98 | 0.715 | 1.138 | 1.31 | 1.86 | 1.308 | 1.71 | 0.852 | 0.733 | 0.744 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7751
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
69-107
|
0.991
|
— | — |
0.000
|
— | — |
0.244
|
0.116
|
0.023
|
0.691
|
0.188
|
0.285
|
0.216
|
0.030
|
0.471
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008828
|
1.000
|
1.000
|
Hsc_gene_17616.t1
|
Hsc_gene_17616.t1
|
— |
P34400.3 Abnormal cell migration protein 10 [Caenorhabditis elegans]
|
KAI1724630.1 PH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0005575_0.859|GO:0110165_0.859|GO:0005622_0.811|GO:0008150_0.799|GO:0009987_0.754|GO:0065007_0.742|GO:0050789_0.733|GO:0050794_0.719|GO:0005737_0.682|GO:0016020_0.675|GO:0050896_0.649|GO:0003674_0.598|GO:0005488_0.563|GO:0043226_0.563|GO:0051716_0.549|GO:0043229_0.536|GO:0005886_0.532|GO:0071944_0.532|GO:0005515_0.504
|
IPR000159+322-408_322-409+|IPR001849+460-572_461-574_462-570+|IPR011993+411-588+|IPR029071+315-413+|IPR039664+96-796+|IPR039665+457-582+
|
SM00233+461-574+|SM00314+322-408+
|
PF00169+462-570+PH_domain|PF21989+322-403+RA_like_domain
|
— |
PTHR11243+96-796+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-109;181-313;649-827
|
2.000
|
110-180;314-648
|
4gmv_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
90634.100
|
7.888
|
12.500
|
24.184
|
9.069
|
49.940
|
50.060
|
13.422
|
10.762
|
55.502
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
295.964
|
461.993
|
426.225
|
156.005
|
157.266
|
192.481
|
648.038
|
876.536
|
13.415
|
190.329
|
114.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.346
|
-1.704
|
-1.341
|
— |
0.306
|
1.763
|
2.084
|
-0.292
|
-3.943
|
— | — | — | — |
No JSON data available for plots.