Hg_chrom4_TN10mRNA_8247
Organism: Heterodera glycines Gene Locus: chr4:6991622-6992874 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.869 | 0.935 | 2.256 | 1.947 | 1.318 | 0.278 | 1.168 | 1.142 | 1.01 | 0.991 | 1.374 | 1.947 | 0.539 | 1.335 | 1.202 | 0.613 | 0.637 | 0.719 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7752
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.491
|
0.417
|
0.023
|
0.519
|
0.136
|
0.296
|
0.168
|
0.036
|
0.179
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003880
|
2.000
|
1.000
|
Hsc_gene_2076.t1
|
— | — |
Q91XF4.1 E3 ubiquitin-protein ligase RNF167 [Mus musculus]
|
KAI1724628.1 zinc finger, c3HC4 type (RING finger) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.950|GO:0003674_0.697|GO:0005575_0.668|GO:0009987_0.667|GO:0110165_0.655|GO:0008152_0.620|GO:0043170_0.620|GO:0005622_0.615|GO:0065007_0.596|GO:0044238_0.592|GO:0050789_0.584|GO:0050794_0.570|GO:0016020_0.539|GO:0005737_0.533|GO:0043226_0.529|GO:0043229_0.505
|
IPR001841+131-168_131-169+|IPR013083+86-198+|IPR017907+145-154+|IPR047126+15-192+
|
SM00184+131-168+
|
PF13920+128-173+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR12109+15-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
211-214
|
1.000
|
1-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
25133.520
|
5.064
|
-5.500
|
32.243
|
13.084
|
53.271
|
46.729
|
15.421
|
16.822
|
42.056
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightgreen
|
901.273
|
751.239
|
939.981
|
988.056
|
1115.863
|
1141.528
|
634.146
|
1021.335
|
724.447
|
927.678
|
840.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.258
|
0.180
|
0.143
|
— |
-0.842
|
— |
-0.550
|
— | — | — | — | — |
No JSON data available for plots.