Hg_chrom4_TN10mRNA_8249
Organism: Heterodera glycines Gene Locus: chr4:6996062-7002574 Feature type: polypeptideProtein Sequence
Length: 1,022
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.183 | 0.801 | 0.304 | 0.995 | 1.204 | 0.711 | 1.027 | 1.174 | 1.23 | 0.845 | 1.842 | 1.631 | 0.696 | 1.238 | 1.286 | 0.85 | 0.89 | 1.129 | 1.007 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7754
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKNDSLFQRNFRRRGF
|
— | — | — | — |
1-28
|
0.911
|
1.000
|
3.000
|
3.000
|
0.067
|
0.052
|
0.190
|
0.150
|
0.268
|
0.560
|
0.208
|
0.025
|
0.786
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008830
|
1.000
|
1.000
|
Hsc_gene_995.t1
|
Hsc_gene_995.t1;Hsc_gene_996.t1
|
— |
P34299.2 Glutamate receptor 1 [Caenorhabditis elegans]
|
KAI1713423.1 ligand-gated ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0006811|GO:0015276|GO:0016020|GO:0038023
|
GO:0005575_0.959|GO:0110165_0.959|GO:0071944_0.941|GO:0005886_0.934|GO:0016020_0.934|GO:0008150_0.924|GO:0009987_0.898|GO:0006810_0.876|GO:0051179_0.876|GO:0051234_0.876|GO:0055085_0.838|GO:0003674_0.830|GO:0065007_0.824|GO:0050789_0.804|GO:0006811_0.799|GO:0034220_0.797|GO:0050896_0.786|GO:0005215_0.784|GO:0022857_0.784|GO:0050794_0.781|GO:0005216_0.777|GO:0015075_0.777|GO:0015267_0.777|GO:0022803_0.777|GO:0051716_0.763|GO:0007154_0.747|GO:0023052_0.746|GO:0022836_0.731|GO:0030054_0.731|GO:0007165_0.717|GO:0060089_0.713|GO:0038023_0.704|GO:0022834_0.682|GO:0004888_0.681|GO:0007166_0.680|GO:0015276_0.680|GO:0045202_0.678|GO:0005488_0.666|GO:0022835_0.646|GO:0030594_0.646|GO:0005230_0.645|GO:0022824_0.645|GO:0005622_0.643|GO:0098590_0.627|GO:0043226_0.625|GO:0015711_0.606|GO:0015849_0.597|GO:0046942_0.597|GO:1903825_0.596|GO:1905039_0.595|GO:0006865_0.591|GO:0003333_0.587|GO:0036094_0.581|GO:0043167_0.581|GO:0008514_0.579|GO:0065008_0.578|GO:0007215_0.577|GO:1990806_0.574|GO:0035235_0.573|GO:0043168_0.573|GO:0005342_0.568|GO:0046943_0.566|GO:0015171_0.561|GO:0016597_0.560|GO:0031406_0.560|GO:0043177_0.560|GO:0007267_0.558|GO:0008066_0.558|GO:0016595_0.558|GO:0099536_0.558|GO:0099537_0.558|GO:0007268_0.557|GO:0098916_0.557|GO:0004970_0.555|GO:0015318_0.530|GO:0032501_0.509|GO:0098794_0.502|GO:0022890_0.501|GO:0043229_0.501
|
IPR001320+469-852_609-884+|IPR001508+612-637_683-710_873-897+|IPR001828+52-427+|IPR015683+128-923+|IPR019594+469-594_479-556+|IPR028082+100-429+
|
SM00079+469-852+|SM00918+479-556+
|
PF00060+609-884+Ligand-gated_ion_channel|PF01094+52-427+Receptor_family_ligand_binding_region|PF10613+469-594+Ligated_ion_channel_L-glutamate-_and_glycine-binding_site
|
G3DSA:1.10.287.70:FF:000064+600-756+Glutamate_receptor_ionotropic,_kainate|G3DSA:3.40.190.10:FF:000189+463-600+Glutamate_receptor_1|G3DSA:3.40.190.10:FF:000241+741-858+Glutamate_receptor_2
|
PTHR18966+128-923+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
927-1022
|
1.000
|
1-926
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
115844.140
|
9.143
|
23.500
|
24.070
|
12.818
|
48.043
|
51.957
|
13.699
|
10.372
|
47.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
742.140
|
3365.905
|
2282.590
|
432.363
|
171.475
|
199.265
|
268.986
|
962.886
|
158.906
|
246.384
|
208.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
-3.098
|
-2.291
|
-1.365
|
— |
0.443
|
2.171
|
-1.698
|
— | — | — | — | — |