Hg_chrom4_TN10mRNA_8251
Organism: Heterodera glycines Gene Locus: chr4:7004634-7008929 Feature type: polypeptideProtein Sequence
Length: 766
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 1.154 | 0.997 | 0.63 | 1.414 | 1.038 | 0.497 | 1.11 | 1.16 | 1.588 | 0.851 | 1.536 | 1.559 | 0.402 | 1.279 | 1.212 | 0.792 | 1.127 | 0.402 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7756
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.250
|
0.062
|
0.018
|
0.445
|
0.165
|
0.534
|
0.563
|
0.018
|
0.176
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008832
|
1.000
|
1.000
|
Hsc_gene_993.t1
|
Hsc_gene_993.t1
|
— |
Q4V9Y0.1 Vacuolar protein sorting-associated protein 51 homolog [Xenopus tropicalis]
|
KAI1718089.1 vps51/Vps67 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0009987_0.903|GO:0051179_0.799|GO:0005575_0.792|GO:0110165_0.784|GO:0006810_0.778|GO:0051234_0.778|GO:0005622_0.726|GO:0005737_0.667|GO:0032501_0.618|GO:0016020_0.590|GO:0051641_0.571|GO:0051649_0.555|GO:0016192_0.545|GO:0043226_0.541|GO:0046907_0.539|GO:0071944_0.535|GO:0005886_0.526|GO:0043229_0.522
|
IPR014812+2-764+
|
— |
PF08700+3-87+Vps51/EXO84/COG1_N-terminal
|
— |
PTHR15954+2-764+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-766
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
86829.360
|
5.792
|
-7.500
|
28.068
|
9.922
|
50.392
|
49.608
|
14.099
|
13.969
|
46.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.