Hg_chrom4_TN10mRNA_8252
Organism: Heterodera glycines Gene Locus: chr4:7009299-7011556 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.151 | 1.575 | 0.9 | 0.449 | 0.781 | 2.003 | 0.434 | 1.302 | 1.157 | 1.021 | 0.671 | 0.766 | 0.579 | 0.851 | 1.276 | 2.009 | 0.64 | 1.105 | 0.401 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
KRAR
|
48-68
|
0.888
|
— | — | — | — |
0.000
|
— | — |
0.722
|
0.203
|
0.034
|
0.448
|
0.097
|
0.064
|
0.099
|
0.042
|
0.225
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003881
|
1.000
|
2.000
|
Hsc_gene_992.t1;Hsc_gene_992.t2
|
Hsc_gene_992.t1;Hsc_gene_992.t2
|
— |
Q24522.2 Protein bunched, class 1/class 3/D/E isoforms [Drosophila melanogaster]
|
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357
|
GO:0008150_0.882|GO:0005575_0.779|GO:0110165_0.770|GO:0065007_0.758|GO:0005622_0.722|GO:0009987_0.713|GO:0050789_0.694|GO:0050794_0.682|GO:0043226_0.527|GO:0043229_0.511
|
IPR000580+251-303+
|
— |
PF01166+251-303+TSC-22/dip/bun_family
|
— |
PTHR12348+64-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-197;296-384
|
2.000
|
1-88;198-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
41865.670
|
8.627
|
9.000
|
22.917
|
6.510
|
55.469
|
44.531
|
13.281
|
9.635
|
56.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1018.722
|
3066.203
|
1943.414
|
991.078
|
839.475
|
917.728
|
1422.495
|
1301.539
|
671.935
|
22.234
|
300.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.889
|
-1.767
|
-0.862
|
-0.271
|
— |
0.642
|
0.399
|
0.270
|
4.676
|
— |
5.211
|
— | — |
No JSON data available for plots.